SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 203119.Cthe_0272 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  203119.Cthe_0272
Domain Number 1 Region: 5-274
Classification Level Classification E-value
Superfamily beta-lactamase/transpeptidase-like 1.92e-81
Family beta-Lactamase/D-ala carboxypeptidase 0.0000116
Further Details:      
 
Domain Number 2 Region: 274-367
Classification Level Classification E-value
Superfamily Penicillin-binding protein associated domain 0.0000000000000192
Family PBP5 C-terminal domain-like 0.0019
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 203119.Cthe_0272
Sequence length 384
Comment (Clostridium thermocellum ATCC 27405)
Sequence
MYNLKGFRSVSVLAVITFFVMMFQVKAFAQFESSAQSAILIEASTGQVLYEKNADVPMPP
ASITKIMTLLLGFEALEKGLVKWDDEVIISEKAWRMEGSKMFLLVGDKAKFGEIMTGISV
VSANDGCVALAEHLYGSEEAFVQVMNTRAKELGLTNTNFANSNGLPAEGHVMSARDISTL
ARYLIQNYPKILELESTTEYTYNNIRQFNRNPLLGVFPGADGLKTGWTEEAGYCIVGTAQ
QNGQRMIGVVLKTSSEKERSKAIQELLNYGFKNFKQVTVKNAGEIVDSIEVKNGKKLSVS
LKLDSDISTVIPVGRENDLQIVTSKKAEFLNAPVSLDIPAGTVEVQLDGKTIATSTMSTA
EEAERLGFFAMILRNIANFFKSLF
Download sequence
Identical sequences A3DC32
gi|125972794|ref|YP_001036704.1| 203119.Cthe_0272 WP_003518173.1.16390 WP_003518173.1.19387 WP_003518173.1.20586 WP_003518173.1.31213 WP_003518173.1.55520 WP_003518173.1.6636 WP_003518173.1.6965 gi|385779290|ref|YP_005688455.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]