SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 264201.pc1278 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  264201.pc1278
Domain Number 1 Region: 418-658
Classification Level Classification E-value
Superfamily RNI-like 4.97e-54
Family 28-residue LRR 0.012
Further Details:      
 
Domain Number 2 Region: 307-414
Classification Level Classification E-value
Superfamily RNI-like 9.42e-19
Family Rna1p (RanGAP1), N-terminal domain 0.058
Further Details:      
 
Domain Number 3 Region: 181-256
Classification Level Classification E-value
Superfamily POZ domain 0.00000361
Family BTB/POZ domain 0.027
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 264201.pc1278
Sequence length 731
Comment (Parachlamydia sp UWE25)
Sequence
MNIHNPSVKPSNLLVNADTHSYFRSNNYLKFSERIGLLCKTIFQGFLNLFFNYLEKEQLQ
SQWREISGGRKEITIPKFIASRLASSDISLTSSSQILCDAPPFSIRTPTQETIDKFEDEN
ELLLNSLANPEELNVLKNTSPKKIKSSTTPQSSDLFSSSQEFKLRFQDETSLNISYSQLA
LLREKSPYFKSLWSGNFRETLQNPLALTQTEFTHLLDCLEYSISFVPLEDILSFIQLADY
YQLSEAGKKLEKQLIEAYKSQKLEPFNSTTDSLVELKALLNFAQQYQLNTLKNYLELIVV
SSLLNQASHVTEFEKILKHFSNEIERLNFSKNASLTDAHLLALKNCKNLKALHLQECYKL
TDTGLVYLAPLVSLQYLNLFDCIKLTDAGLAHLTPLVALRHLNLMGCNKLTNAGLMHLRP
LMALQHLDLSCCRNLTDAGLAHLAPLVALQHLCLSECTNLTGAGLAHLKPLVNLQHLNLN
SCYKLTDAGLAHLTPLMALQHLDLSCCRNLTDAGLAHLRPLVALQHLDLNCCKNFTDAGL
THLTPLVALQHLNLSCCRNLTDAGLAYLMPLVALSHLNLAGCHNFTDAGLAHLAPLVALQ
HLNLGDCYRLTNAGLEHLTPLVALQHLDLSECEKLTDAGLTHLVPLVALTHLDLSECDKL
TDAGLAHLTPLEALQHLNLNWCDKLTDAGLAHLTPLLALQDLYLGYCKNFTEVGLAHFKS
SVAPLHLKIIR
Download sequence
Identical sequences Q6MBP7
264201.pc1278 WP_011175827.1.90613 gi|46446912|ref|YP_008277.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]