SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 29760.GSVIVG00034017001 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  29760.GSVIVG00034017001
Domain Number 1 Region: 197-237
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000000174
Family Retrovirus zinc finger-like domains 0.0018
Further Details:      
 
Domain Number 2 Region: 289-300,328-515,569-603
Classification Level Classification E-value
Superfamily SGNH hydrolase 0.00000282
Family TAP-like 0.076
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 29760.GSVIVG00034017001
Sequence length 621
Comment (Vitis vinifera)
Sequence
MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD
LMKALSGMYEKSSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEI
RALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL
ETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHFKRQCKSPKKKNEDDS
ANAAYSIKVIMKSLSFHFCVLIIFGSLLIPAICHGHDSHSQKPHKHVPLFVFGDSLFDPG
NNLYLNTSHKEASAYWPYGETFFKRPTGRLSDGRLVPDFIAEFMELPLTTAYLQPGTHRF
THGSNFASGGAGVLADTHPGTISLPLQLSYFKNVVKQLKQKLGEVKTKKLLMRAVYLFSI
GGNDYFGFYMKNQNASQSSQTQFVGMVIRNLTNALEEIYQIGGRKIAFQNVGPLGCVPTN
RAKTGNGACAEEASAMAKMHNAALANVLKNLQTRLPRFKYSIFDYYNTLSDKINHPSKYG
FKEGKSACCGSGAYRANNCGGQGVGGTTTKFELCSIPGDYVWFDGGHTTERANRQLAELL
WNGTPNCTAPHNIKQLFGHME
Download sequence
Identical sequences 29760.GSVIVG00034017001

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]