SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 29883.JGI246820 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  29883.JGI246820
Domain Number - Region: 86-109
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0445
Family Retrovirus zinc finger-like domains 0.0057
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 29883.JGI246820
Sequence length 548
Comment (Laccaria bicolor)
Sequence
GKLSREEFRRQKDLDAARKAGTAPAALDEEGRPINPHIPQYISQAPWYLDTGAPSLNHQR
RPDYDDSSNKLDNWYDRGAKAGPAAKKYRKGACENCGALTHKKQDCLERPRKKGAKFTNK
DIQADEIIQEVATGYDAKRDRWNGYDAAEHKRVYDEYAAVEAARQKMREEEIDNQTTTDL
AAVRKVAKASKSDVKEADADFGSSEDEDADEDKYADAADAVGQKLDAKTRITVRNLRIRE
DTAKYLINLDPESAYYDPKTRSMRDAPLKNIPAEEARFAGDNFFRYSGEAPEVQQLQLFA
WQAAARGNDVHLNANPTQGELLHYEFRQKKEELKDTTKTSILAKYGGAEYLDTAPKELRQ
GQTEDYVEYSRTGQVIKGRERAKAKSKYPEDVYINNHTAVWGSWYNSSDGTWGYACCHSN
IHISYCSGQAGIDAAEASSAQHLLASAPQPAAHEPPKDEFQTQRSEKVDQNYSKRRIGEG
EVKLDDERLAKAVREEKKRKERGGKDMDDRSGKKQKVGSHDVTEEELEAYRMTRRMAEDP
MANYVDEN
Download sequence
Identical sequences B0D0U9
jgi|Lacbi1|246820|e_gww1.5.153.1 XP_001877782.1.58555 29883.JGI246820

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]