SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 29883.JGI301133 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  29883.JGI301133
Domain Number 1 Region: 80-358
Classification Level Classification E-value
Superfamily WD40 repeat-like 4.03e-28
Family WD40-repeat 0.01
Further Details:      
 
Domain Number 2 Region: 252-344,513-705
Classification Level Classification E-value
Superfamily WD40 repeat-like 9.77e-26
Family WD40-repeat 0.0035
Further Details:      
 
Weak hits

Sequence:  29883.JGI301133
Domain Number - Region: 406-552
Classification Level Classification E-value
Superfamily YVTN repeat-like/Quinoprotein amine dehydrogenase 0.000541
Family YVTN repeat 0.089
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 29883.JGI301133
Sequence length 963
Comment (Laccaria bicolor)
Sequence
MAPSIEPYPQPQPLPSKTKQRPTRDSGDIRLKKAKGKQNASPPIPPTDPSPPTPWEWASL
SDPSSSKTPPIFTNDGRSASYFFSLVGSQVKIHSVATGQVVSILTSSPPSTTETSPDSLT
SAIINPHNAFQLITGSLDGRAMIWDFINATLLQTIDIGQPIHYICAHKEFKDTIFVAASR
PTKKDNNAVILRVSLKPTENATEILPIGKIRSPAGLAISPNGAWIVAAAGHKVYVARTSD
LASGFTKYVSPERLTCLAFHPSDEYFATGDEKGVVRLWYCLNNDLAINSRGVEKRTQTTS
LHWHAHAVSSVTFTPNGAYLLSGGEEAVLVIWQVHTGKKEFIPRLGAPINAVSVSNRGTA
EEYLVRLADSTHSFISSSSLRITRSYSQIRVDPSICYPPSAPISVPLAVHSSSSTLILPT
SHPSSIQIYSPLSSTSTSELEVSPSNRVSRRDEKPLEPSRVESVVVSSSGLWMSTIDSRQ
GDANFGTEVFLKFWIWDQKTRRWLLNTRIDRPHGQKKVNDLSFSPDKGKKQPITLLSTGE
DGCIKFWVLRSRKSGSASQEDFWIARASFSFRSAMPHCASWSPDASLVAVSLGPHVAIYD
PITATLCQTLIAPECQDSKLVDFIGNAGRYLAVAGLSSIVLWDLVSKTVCWHFDSPLGVC
RIVSHPTEDKFVVFHETPLDDEGQRTTISVFHVSSRVPQRTCTVPFGLRNVTWYCASPTT
TNFSFVGISYNWSVVVFGDKSLLRKGETTTLKELIGFSTVQGRTLFQDVFGKSAFLDAFT
RTSQAPRISSEVHTESVDKADMIFEYPAYLMPSLDHLFDPLLESFLKTSVQRANLSQEVA
AGEQEEDDVDMEDPMSASITVESVGRCLNQVKLDVVTDLFRRHSICGSAGAVHPTVTGQL
NDIAQCRVKDIQPLSLPKSFLFKNGTRKVALLLSNSTSPSPASSVPVSSSTVTTGKKRKK
SLG
Download sequence
Identical sequences B0CRE8
jgi|Lacbi1|301133|eu2.Lbscf0001g05820 29883.JGI301133 XP_001873397.1.58555

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]