SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 3055.JGI180826 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  3055.JGI180826
Domain Number 1 Region: 408-643
Classification Level Classification E-value
Superfamily Voltage-gated potassium channels 1.49e-30
Family Voltage-gated potassium channels 0.013
Further Details:      
 
Domain Number 2 Region: 1127-1280,1328-1405
Classification Level Classification E-value
Superfamily Voltage-gated potassium channels 7.32e-28
Family Voltage-gated potassium channels 0.02
Further Details:      
 
Domain Number 3 Region: 1457-1699
Classification Level Classification E-value
Superfamily Voltage-gated potassium channels 1.06e-26
Family Voltage-gated potassium channels 0.019
Further Details:      
 
Domain Number 4 Region: 35-209,247-315
Classification Level Classification E-value
Superfamily Voltage-gated potassium channels 3.37e-18
Family Voltage-gated potassium channels 0.02
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 3055.JGI180826
Sequence length 1878
Comment (Chlamydomonas reinhardtii)
Sequence
TCDAYNTHLDANDNAWWLFARTNRVRQLCLRICAWPWFGRIILTLVLASCLVMALDDPGC
TDACKQEAVLTKVASVVLDLFFTTAFTIEIIIKSIGHNFCFGPDAYLKSGWNWIDFLSTA
SGYLRYLPISENGGLSGIRAMRALRPLRALNAIPGNMLPLATAAATLAGLRMLVETLLEA
VPLLIDVLMLLTWVFFVFGIVALNLFMGKLHNRCMIQNTVCSGSGPGILKCPDGATCLDT
NTNPNYGYTSFDNFAAASYCIFQMLTLDAWTSTLLYPLMNSIGPALPVLYFTLLVLFGAF
FAMQLLVAILSSKFAQLSAQRPKKRKKRRRRRAHTPPDTTDEDNDDCESDPDDDGQPRRC
RLRIPPLGTRLRRWWRRNWYHFHRTYLMALRRKDLPPWRAFFWDVTYSIWFNNIMTGFIL
ANTVTLGLEHYGMGDAMLHTLEIINLALTAGFILEFVVKHLGCGIVGYWRDPWNILDGLI
VVLSIVEIILTYGPASGGGTNTQSLRTFRLLRILRSLKLLARVKALRKLMRMVIKGFVAL
KDFLMLLVLFIFIFSILGLQQFGGAAAFAPAPPAVGYNPNFDTLWQSGYTVFQLLTSDSW
VSTSWTGMLARGTAACLYFITWIVIGNFVLLTLFLAILITNFQSDEDVEPTEEELNSNPY
APDDQSETASTLGGSTLGGEPGSNGPQNALGQRVVGRTQEKDVYAIKKWMVLMGYYHGMK
QAEVSDISMRMDDMFTRNQGMFAPFARTDIVNYDERDQARERERERDRDSTNTATSVHGS
PGPGAGHGGRSSALRRVSNPLSAALSKFGAQLQSISSGGPVEQPGVGPQMRPMDTVAEEG
EQGVNATVSADVTGDRVDEVDSPSPMRRRREFVEQWRTWFDDAESAPASSFTASGVLRTG
STELKMAAGVGLPRAASANAASAAAAAAAAAVADRANKAGPAESAHSKSGSFRSRALGAG
GTALHIRNMAKSSSDRCVGGQEQLLVALVASAAETDGPATPDGGDGGFANHGSSSPRSRQ
QGMAAAREQYAAQPAHERHPVQGRDNVPAAAASSVTGSPTASRRPVAEGVMPSAMDPAVL
QLVAVASPAGAAVPDQDPYPYLKFSAFIFLAPYHPYRMKMQAVVSNKWFEGFIMLMILIS
SITLALDRPTLDPASSMAEAVKIIEWTINILFAIEMIIKLLLKGCIWHRSAYWRNGWDIL
DGLIVVTSLVSMAAPSIAFFRTLRLLRVLRPLRMVSRVRGMRMVVETLITSLPAVANVML
FGGFMFGIFGILGTQLYMGRTSRCNQNSFANGTAVLDKSMCMPGVFICTDSDICDTIGEP
TTRTWVTPYRNFDHLGRSLLTLFIVATLDGYMDTLQAVVDAVGVDKQPQYNHAPYMGMYV
ISFVFLGSFFWLNLLVSVIIDYYSQLMMKEEGMLADKSMREWMKLLQFTARPQKDIWRTI
PVPKNPLRARCYGIASSPYFDNFIMSIIMANVLVMALPHEGSTPTFEDTLAFFNAAFTLV
FIFEAVVKNMAMGPRVYIKDNWNKLDLFIVITSIPDLLSLVVPLGAGTGVMTVFRIMRIG
RMFKLIKNARGLRTLFNTLISSLPAIVNVGSLLFLLMFIYAVLGMNLFGTPGNPFEGGTD
SNFNNFGASLVVLFQAVAAVFTGDGWSAVMAQASGCDSFQFQCKTSGQALVAALFFCSFI
MLANFVMLNLVIAVILDNFITSAKDEGLLTISNFSETMSKVISLRIFVRLLKTKIELMKA
VDELKAFANHNENGGHATNLLLTRDRRAKSRKKPSAVNIPLVGVLGKQGEASPASTAGGI
EVVSGPTLGRIGTGLLGAAQGRNSHLSIPSRDEGHSVKRSDSRDATNNSSYFGAIRRALT
RQESRVKGHAEHCSCVII
Download sequence
Identical sequences A8JIU8
3055.JGI180826 jgi|Chlre4|180826|fgenesh2_pg.C_scaffold_110000004 XP_001691131.1.80978

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]