SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 3218.JGI100378 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  3218.JGI100378
Domain Number - Region: 400-439
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0126
Family Retrovirus zinc finger-like domains 0.0069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI100378
Sequence length 483
Comment (Physcomitrella patens)
Sequence
MPSAFSSRKARFLGEVSGGESSKGQGMHMDPSIASLFQAFSLSMQQQQSNDRKKALATKA
LQAVVNKIDQFDGRNISRYLRCYVREMELNQVSEKKMVALFGLTTIPEIRNHITSIMDRC
GNSWEDFWEKFLVESLLKDKQQQSNDRKKALATKALQAVVNKIDQFDGRNISRYLRCYVR
EMELNQVSEKKMVALFGLTTIPEIRNHITSIMDRCGNSWEVFLHALKDESFLEDADRVTK
KLFLGWIERPNKNLQVTELLREFERQYSQLSKVEKLTLEPNKVDLFLQAVDGELQEKLEL
LLEDKEEDEGLTTKWKNVEDAVELLTKKERKKDRKNIPKIVQAPKAPVRTTPPTMPTVQP
STSLSKKADMGMEEIIRGMRDLQIKLARLEENTSINNSKNVSKQGYVQRCIWCDDASHTR
KDCNEFNNMIRQGIICWKDGKIALKDREDLLQTNFGKGGMRALVQDYLKEHETVVRESAS
YGA
Download sequence
Identical sequences A9U1J8
3218.JGI100378 jgi|Phypa1_1|100378|fgenesh1_pg.scaffold_420000013 XP_001784736.1.60028

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]