SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 3218.JGI77289 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  3218.JGI77289
Domain Number 1 Region: 140-250
Classification Level Classification E-value
Superfamily POZ domain 2.25e-24
Family BTB/POZ domain 0.011
Further Details:      
 
Weak hits

Sequence:  3218.JGI77289
Domain Number - Region: 78-105
Classification Level Classification E-value
Superfamily Ran binding protein zinc finger-like 0.0439
Family Ran binding protein zinc finger-like 0.0085
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 3218.JGI77289
Sequence length 320
Comment (Physcomitrella patens)
Sequence
MSTIAQTSRHCVRGSSCRAVANERCCWLYMRVKLERPEMLENWKRKVKYRRMMDGGRGAG
DEDGGGGGGGAGVALATDLSMCFQCGNLIENTVTYCHTCYDLRSESDFRNEQRWRNLESN
LLAVEADLQKERAATKRLEGTLQSFRHMLLQGIHADVTIETGEFDKTPAHRAVLASRSPV
FRAMFEHELKEKTCACIHVADVPTPAMRALLLYLYTGDHDAKVMKEHGMALLTAAHKYDI
PDLKRVCETAVANAVQPSNVLEILHQARLYDATWVKKACIECIAQNLKQVAFTKEFRNLV
YRNDDPEAILDIIQSIAALQ
Download sequence
Identical sequences A9SBY8
XP_001763910.1.60028 jgi|Phypa1_1|77289|fgenesh1_pg.scaffold_64000041 3218.JGI77289

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]