SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 3694.fgenesh4_pg.C_scaffold_41000238 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  3694.fgenesh4_pg.C_scaffold_41000238
Domain Number 1 Region: 183-447
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 7.79e-67
Family Extended AAA-ATPase domain 0.052
Further Details:      
 
Domain Number 2 Region: 11-163
Classification Level Classification E-value
Superfamily Toll/Interleukin receptor TIR domain 2.22e-46
Family Toll/Interleukin receptor TIR domain 0.0022
Further Details:      
 
Domain Number 3 Region: 540-720
Classification Level Classification E-value
Superfamily L domain-like 7.48e-23
Family Ngr ectodomain-like 0.024
Further Details:      
 
Domain Number 4 Region: 424-528
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 4.35e-17
Family Archaeal DNA-binding protein 0.085
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 3694.fgenesh4_pg.C_scaffold_41000238
Sequence length 722
Comment (Populus trichocarpa)
Sequence
MASSSMQKAASSSYSPPQWKYDVFLSFRGKDTRNNFTSHLYSNLEQRGIDVYMDDSGLER
GKTIEPALWQAIEDSRFSIVVFSRDYASSSWCLDELVKIVQCMKEMGHTVLPVFYDVDPS
EVADQTGDYKKAFIEHKEKHSGNLDKVKCWSDCLSTVANLSGWDVRNSDESQSIKKIVEY
IQCKLSFTLPTISKNLVGMDSRLKVLNEYIDEQVNDTLFIGICGMGGMGKTTVARVLYDR
IRWQFGGSCFLANVREVFAEKDGLCRLQEQLLSEISMELPTARDSSRRIDLIKRRLRLKK
VLLILDDVDDEEQLQMLAAEHGSFGPGSRIIITSRNKHVLDSHGVTRIYEAEKLNDKDAL
LLFSWKAFKRDQPAEDLSELSKQVVGYANGLPLALEVIGSFLHKRGLREWKSAINRMNDI
PDRKIIDVLRISFDGLHELEKKIFLDIACFLKGMKKDRITRLLDSCGFHADIGMQVLIEK
SLIRVSRDEIWMHNLLQKMGEEIVRCESPEEPGRRSRLHTYKDVSDALKDSTGKIESIFL
DLPKAKEATWNMTAFSKMTKLRLLKIHNVDLSEGPEYLSNELRFLEWHAYPSKSLPACFR
PDELVELYMSCSRIEQLWCGCKILVNLKIINLSNSLYLINTPDFTGIPNLESLILEGCAS
LSEVHPSFGRHKKLQLVNLVNCYSLRILPSNLEMESLEVCTLSGCSKLDKFPDIVGNMNC
LR
Download sequence
Identical sequences 3694.fgenesh4_pg.C_scaffold_41000238

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]