SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 3702.AT1G12860.1-P from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  3702.AT1G12860.1-P
Domain Number 1 Region: 644-714
Classification Level Classification E-value
Superfamily HLH, helix-loop-helix DNA-binding domain 1.31e-16
Family HLH, helix-loop-helix DNA-binding domain 0.0025
Further Details:      
 
Domain Number 2 Region: 67-125
Classification Level Classification E-value
Superfamily F-box domain 0.00000000017
Family F-box domain 0.0083
Further Details:      
 
Domain Number 3 Region: 183-378
Classification Level Classification E-value
Superfamily Galactose oxidase, central domain 0.00000124
Family Galactose oxidase, central domain 0.041
Further Details:      
 
Weak hits

Sequence:  3702.AT1G12860.1-P
Domain Number - Region: 754-817
Classification Level Classification E-value
Superfamily ACT-like 0.00366
Family Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 0.094
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 3702.AT1G12860.1-P
Sequence length 828
Comment (Arabidopsis thaliana)
Sequence
MESREDSFISKEKKSTMKKEKQAIASQRNRRRVIKNRGNGKRLIASLSQRKRRRIPRGRG
NEKAVFAPSSLPNDVVEEIFLRLPVKAIIQLKSLSKQWRSTIESRSFEERHLKIVERSRV
DFPQVMVMSEEYSLKGSKGNQPRPDTDIGFSTICLESASILSSTLITFPQGFQHRIYASE
SCDGLFCIHSLKTQAIYVVNPATRWFRQLPPARFQILMQKLYPTQDTWIDIKPVVCYTAF
VKANDYKLVWLYNSDASNPNLGVTKCEVFDFRANAWRYLTCTPSYRIFPDQVPAATNGSI
YWFTEPYNGEIKVVALDIHTETFRVLPKINPAIASSDPDHIDMCTLDNGLCMSKRESDTL
VQEIWRLKSSEDSWEKFDMNSDGVWLDGSGESPEVNNGEAASWVRNPDEDWFNNPPPPQH
TNQNDFRFNGGFPLNPSENLLLLLQQSIDSSSSSSPLLHPFTLDAASQQQQQQQQQQEQS
FLATKACIVSLLNVPTINNNTFDDFGFDSGFLGQQFHGNHQSPNSMNFTGLNHSVPDFLP
APENSSGSCGLSPLFSNRAKVLKPLQVMASSGSQPTLFQKRAAMRQSSSSKMCNSESSSE
MRKSSYEREIDDTSTGIIDISGLNYESDDHNTNNNKGKKKGMPAKNLMAERRRRKKLNDR
LYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHTELESTPPSSSSLHPLTPTPQT
LSYRVKEELCPSSSLPSPKGQQPRVEVRLREGKAVNIHMFCGRRPGLLLSTMRALDNLGL
DVQQAVISCFNGFALDVFRAEQCQEDHDVLPEQIKAVLLDTAGYAGLV
Download sequence
Identical sequences 3702.AT1G12860.1-P

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]