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Domain assignment for 375451.RD1_0637 from STRING v9.0.5

Domain architecture


Domain assignment details

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Strong hits

Sequence:  375451.RD1_0637
Domain Number 1 Region: 2-144
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 2.63e-49
Family Ribonuclease PH domain 1-like 0.0000254
Further Details:      
 
Domain Number 2 Region: 301-492
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 2.78e-46
Family Ribonuclease PH domain 1-like 0.0000151
Further Details:      
 
Domain Number 3 Region: 453-545
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 1.66e-26
Family Ribonuclease PH domain 2-like 0.00014
Further Details:      
 
Domain Number 4 Region: 145-242
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 3.17e-26
Family Ribonuclease PH domain 2-like 0.0018
Further Details:      
 
Domain Number 5 Region: 611-696
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 3.94e-22
Family Cold shock DNA-binding domain-like 0.00049
Further Details:      
 
Domain Number 6 Region: 550-639
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 1.87e-18
Family Eukaryotic type KH-domain (KH-domain type I) 0.0017
Further Details:      
 
Domain Number 7 Region: 245-324
Classification Level Classification E-value
Superfamily Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.000000000000141
Family Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.003
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 375451.RD1_0637
Sequence length 711
Comment (Roseobacter denitrificans OCh 114)
Sequence
MFNETKKSIEWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPLRPLFVPGFKNEVLVMCTVLSH
DLVNDPDMVAMIAASAALTISGAPFMGPIAGARVGFEDGEYILNPTVDDMQDLRLNPEQR
LDLVVAGTKDAVMMVESEAYELSEAEMLGAVKFAHDAIQPVLDLIIDLAEDCAKEPFDFS
PPDYSELSAAVKAAGETEMRAAFAISDKQERTTAVAAARETIMAALSDEQKEDPNLGSAM
KGLEASILRGDVVKTGKRIDGRKTDEIRDIVCETGLLPRTHGSALFTRGETQGLVVTTLG
TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVLPA
ATDFPYTVRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGSYA
ILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALEQAKAGRIHILGE
MAKSITGAQDFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGIIKI
ASPNGEAIKKAYDMIHSIVAEPEEGMVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIKKEEAPAD
Download sequence
Identical sequences Q16CF6
gi|110678016|ref|YP_681023.1| WP_011566959.1.1045 WP_011566959.1.29122 375451.RD1_0637 RdR84

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