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Domain assignment for 39947.LOC_Os01g73344.1 from STRING v9.0.5

Domain architecture


Domain assignment details

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Strong hits

Sequence:  39947.LOC_Os01g73344.1
Domain Number 1 Region: 853-1282
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 1.78e-178
Family Reverse transcriptase 0.0000103
Further Details:      
 
Domain Number 2 Region: 1454-1613
Classification Level Classification E-value
Superfamily Ribonuclease H-like 3.92e-45
Family Retroviral integrase, catalytic domain 0.011
Further Details:      
 
Domain Number 3 Region: 695-800
Classification Level Classification E-value
Superfamily Acid proteases 6e-16
Family Retroviral protease (retropepsin) 0.029
Further Details:      
 
Domain Number 4 Region: 639-680
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000000000558
Family Retrovirus zinc finger-like domains 0.0037
Further Details:      
 
Domain Number 5 Region: 1725-1805
Classification Level Classification E-value
Superfamily Chromo domain-like 0.0000154
Family Chromo domain 0.015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 39947.LOC_Os01g73344.1
Sequence length 1823
Comment (Oryza sativa)
Sequence
MERPKSPLNPFHCICSLQLDFVPGKWGSVLVVQGKNLGRSFKMAGHPPNHRGEGMIDFVA
ELARMTLVVGYPDAPEYTTIPPLSGELPHRVRLEVHGYVGTCLANMAVEASGGTADHACQ
EAAYLMMARLRERHDYIFHDTAYRYHPRRAHGDGVSSFRPTAGENDTTFGHMCAVMRGLD
RMHSDLHKATKALNDGKLMRIVALKDEVARLKKENAQLKGLPAPGGVRIRTTPRKRTTAP
VRIQLAPRNPPPPAAPAAPSVLPAVPAAPASAPAPAPAFTLSFAPASAARGSASGTGGCL
FGMVYTRTGSRATGEGSNGEERADGVHPNGDSGNGPPPLPENPTLAQVMAHQTQMMAAMM
QQMQQQHQQMHQRMMQHAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHA
IEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEVTWAEFCRSFRKAQVPD
GVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAPEDVRTDAEKQEKFMAGLDDELTNQL
ISGDYADFERLVDKAIRQEDQRNKMDRKRKAAQFRSNQGSQHRPRFTPGQQGGPTTMIVR
QHRPFNPSNFHQGTSGSQNHHGGQPNRGAAPRPPMAPAQSGQPAQAKKETGAKPGSCFNC
GELGHFADKCPKPRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGAT
HSFISKKFVGMHGLIREELSTPMRVHTPGNSSTSVQFSPSITIEIQRSPFLANLILLESK
DLDVILGMDWLTKFKGVIDCASRTVTLTNEKGETVVYKSLVSPKKGASLNQIETEIPVDT
EEKNLRKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELA
EVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRID
DLFDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFM
NLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLT
EVKFLGHVITAQGVAVDPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSRIARPM
TQLLKKDEKFKWTAECDKSFEELKRKLVSAPVLILPDQTKDFQVYCDASRHGLGCVLMQE
GRVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFTQP
DLNLRQRRWLELIKDYDMSIHYHPGKANVVADALSRKSYCTALCIEGMCEELRQEFEHLN
VGIVEHGFVAALEARPTLVDQVRAAQVNDPEIAELKKNMRVGKARDFLEDEHGTIWMGER
LCVPDDKELKDLILTEAHQTPYSIHPGSTKMYQDLKEKFWWVSMRREIAEFVALCNVCQR
VKAEHQRPAGLLQPLQIPEWKWEEIGMDFITGLPRTSSGHDSIWVVVDRLTKVAHFIPVH
TTYTGKRLAELYLARIMCLHGVPKKIVSDRGSQFTSKFWQKLQEELGTRLNFSTAYHPQT
DGQTERVNQILEDMLRACALDFGGAWDKSLPYAEFSYNNSYQASLQMAPFEALYGRKCRT
PLFWDQTGERQLFGTEVLAEAEEKVRIIRERLRIAQSRQKSYADNRRRELTFEAGDYVYL
RVTPLRGVHRFQTKGKLAPRFVGPYKILERRGEVAYQLELPSNMIGIHDVFHVSQLKKCL
RVPEEQADSEHIDIQEDLTYVEKPVRILDTSERRTRNKVTRFCRVQWSHHSEEEATWERE
DELKAAHPHLFTSSSESRGRDSV
Download sequence
Identical sequences 39947.LOC_Os01g73344.1 LOC_Os01g73344.1|13101.m08004|protein LOC_Os01g73344.1|PACid:21910562

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