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Domain assignment for 39947.LOC_Os06g03474.1 from STRING v9.0.5

Domain architecture


Domain assignment details

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Strong hits

Sequence:  39947.LOC_Os06g03474.1
Domain Number 1 Region: 942-1101
Classification Level Classification E-value
Superfamily Ribonuclease H-like 2.91e-44
Family Retroviral integrase, catalytic domain 0.013
Further Details:      
 
Domain Number 2 Region: 588-695
Classification Level Classification E-value
Superfamily Acid proteases 0.00000000000000165
Family Retroviral protease (retropepsin) 0.03
Further Details:      
 
Domain Number 3 Region: 528-562
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00000000488
Family Retrovirus zinc finger-like domains 0.0034
Further Details:      
 
Domain Number 4 Region: 1213-1292
Classification Level Classification E-value
Superfamily Chromo domain-like 0.00000055
Family Chromo domain 0.014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 39947.LOC_Os06g03474.1
Sequence length 1310
Comment (Oryza sativa)
Sequence
MSFVISLTPLIIIKDALTEWLGLYNRMPRYKPEYLFGVEGFVQELRTMSFVIGFGTAPFY
AQIPHDRHEEKCRVKVTLNSNSEDIPSVMFEAGGRNYIHACQEVARIAIGELRDRYSDQL
ADTEYRYHPRQPQGSDRGSYLETEGIENDATTKHLVEMLWAMDESRAETVLAAQDREDRN
RGKICKLEDKVDRLEKELAALKGEAPPQKARIRLTARKRALFVPRYQLAPKMVNTRSNGN
GPNNPNNNNNGENPTLAQVLAQQTQLMNMMMQQFQNQQNQGNNHVPPQNKLAEFLRVRPP
VFSSTTNPVEASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEP
ITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEE
RQEKFLGGLNDELSYPLMVGDYPDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQ
KPRLTLGPQSMPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAPAQQQPAKREQGNKP
VVCFNCGDPGHYADKCPKPRRVKVVPAQNNSAVPASKARVNHVAAAEAQDAPDVILGTFL
VNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRSPSVKIEI
QGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCANRKVTLNSYDGRVVTVHALSAESL
RSILNQITLEEIPIVREYPDVFPDDLPGMPPKRDIEFRIDLDYDMGIHYHPGKANVVADA
LSRKGYCNATEGRQLPLELCKEFERLNLGIVGRGFVAALEAKPTLIDQVREAQINDPDIQ
EIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQ
DLRERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGL
PRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQ
FTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYA
EFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKVIQERLR
VAQSRHKSYADNRHRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYKIASRRGE
VAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANIEQIEVQEDLTYVEKPIRILETNER
RTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLFASSSESRGRDSV
Download sequence
Identical sequences LOC_Os06g03474.1|PACid:21930679 39947.LOC_Os06g03474.1 LOC_Os06g03474.1|13106.m00279|protein

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