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Domain assignment for 39947.LOC_Os08g20350.1 from STRING v9.0.5

Domain architecture


Domain assignment details

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Strong hits

Sequence:  39947.LOC_Os08g20350.1
Domain Number 1 Region: 812-1241
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 7.56e-178
Family Reverse transcriptase 0.0000139
Further Details:      
 
Domain Number 2 Region: 1413-1573
Classification Level Classification E-value
Superfamily Ribonuclease H-like 4.55e-43
Family Retroviral integrase, catalytic domain 0.014
Further Details:      
 
Domain Number 3 Region: 668-772
Classification Level Classification E-value
Superfamily Acid proteases 0.0000000000000429
Family Retroviral protease (retropepsin) 0.026
Further Details:      
 
Domain Number 4 Region: 605-641
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000000244
Family Retrovirus zinc finger-like domains 0.0046
Further Details:      
 
Domain Number 5 Region: 1685-1764
Classification Level Classification E-value
Superfamily Chromo domain-like 0.0000209
Family Chromo domain 0.01
Further Details:      
 
Weak hits

Sequence:  39947.LOC_Os08g20350.1
Domain Number - Region: 311-316,413-430
Classification Level Classification E-value
Superfamily Formin homology 2 domain (FH2 domain) 0.0471
Family Formin homology 2 domain (FH2 domain) 0.06
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 39947.LOC_Os08g20350.1
Sequence length 1782
Comment (Oryza sativa)
Sequence
MGWKLCHVFRLYTVVMAGSVTRRGLHMTGFVLELRGMCVVLGYPHGVDYQARPLPEQEGE
DAEPHAGWEVTAVILSGSPERTSLAVTAGGDSFPAACQNAALLAIGTLHQRYPDELQHSP
YRYHPRRGGARDYATFRDASSEDDATVVHLARMVEAYDAARIDFHQMVRRGMVENNMKIL
ELRQENLQLKKDLDALEAQLHQLKIAQGEDSRPKRRRVCRSQKITARKSTSRPELVRQSL
AWTCFVETPRAEPAPVVPQEGEASGVGSSEAPSLFAGSGWGFQMVTTRRNVNTGEGNQPE
GSNPNHQGNPPPPPPPDTNAILTQILAQQANLMNAFLHHLQNPPQQNAPPPPPQHSKLAE
FLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVTFAAHQLQGPASLWWDHFQA
TQPEGQPITWTRFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNNLARYAPE
DVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESHKRRLANFR
NQQGANQRVRYTNPYPGGSSSQQQQQQQPRPAPRPQFVVRVPQQQQQQNQQGTRAPRPPT
PTVQPVQGRRDASGPQRLCFNCFEPGHFADKCPEPRRQQGQAPPRSNNGGKDVIRGRVNH
VTAEDVLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITT
PGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTL
YRGPEQPVVFFAPPTSVRSSELHQIGLSEIPIVREFGDVFPEELPGMPPKREIEFRIDLA
PGTTPLHKRPYRMAANELAEVKTQLEELKEEGYIRPSTSPWGAPVIFVEKKDKTKRMCVD
YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYG
LYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLG
KLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQIRSFLG
LAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKD
FMVYCDASRQGLGCVLMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIG
NRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKSHCN
TLNVRGIPPELNQQMEALNLNIVGRGFLAALEAQPTLLDQIREAQKNDPDMHGLLKNMKQ
GKAAGFTEDEHGTLWNGKRVCVPDSRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWW
VSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYD
SIWVIVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRGSQFTSHFWKK
LQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSY
QASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILREAEAKVRIIRDNLKVAQSRQKS
YADNRRRDLEFAVDDFVYLRVTPLRGVHRFQTKGKLAPRYVGPFRIIARRGEVAYQLELP
ASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVREDLTYVEKPVKILDTMERRTRNRVIR
FCKVQWSNHAEEEATWEREDELKAAHPDLFASSSESRGRDSV
Download sequence
Identical sequences LOC_Os08g20350.1|PACid:21886718 39947.LOC_Os08g20350.1 LOC_Os08g20350.1|13108.m02122|protein

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