SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 4558.Sb04g027170.1 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  4558.Sb04g027170.1
Domain Number 1 Region: 35-87
Classification Level Classification E-value
Superfamily Ribonuclease H-like 0.0000000108
Family Retroviral integrase, catalytic domain 0.039
Further Details:      
 
Domain Number 2 Region: 202-273
Classification Level Classification E-value
Superfamily Chromo domain-like 0.00000334
Family Chromo domain 0.014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 4558.Sb04g027170.1
Sequence length 439
Comment (Sorghum bicolor)
Sequence
MSQPPPTSGVSVGFAPPTTSVGVSSPPTTTQPGGQTDGQSEAVNKMIAMYLRCLTGDRSR
AWLDWLPWAEYCYNTAHHSSLRTSPFKVVYGLDPPALLPYTAGSSQTGAADRLLQDRDTF
LEEVRERLLQGQVYAKKYYDANHRALEFAVGDWVWLRLLHRPAQSLVPGPRGKLRPRFAG
PFRVLERVGDVAYRLELPADARIHDLFHVGVLKPYRRPRRLRFLPCAMAGSCSNRRGRSV
LNYVWGVWHVLIQWLNLPDSEATWEPLEDFRSRFPSFQLEDELFVEGGRVVMAALYYEEA
YAALVAPPLQNHFERSWVSHVQLKAALFNAEACYRYSIELHGKTEIGEEISRLQVGIKAL
VDAKRTARGAPGPLYDYAFRLEQDMNKSMETAKEENYRVYLFRIPAAESLASLPAASLVR
SASLSEILDPKTESSTQSP
Download sequence
Identical sequences jgi|Sorbi1|5055513|Sb04g027170 4558.Sb04g027170.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]