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Domain assignment for 458817.Shal_3142 from STRING v9.0.5

Domain architecture


Domain assignment details

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Strong hits

Sequence:  458817.Shal_3142
Domain Number 1 Region: 3-146
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 3.19e-50
Family Ribonuclease PH domain 1-like 0.0000208
Further Details:      
 
Domain Number 2 Region: 301-494
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 4.96e-46
Family Ribonuclease PH domain 1-like 0.000019
Further Details:      
 
Domain Number 3 Region: 147-238
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 3.09e-28
Family Ribonuclease PH domain 2-like 0.00099
Further Details:      
 
Domain Number 4 Region: 452-550
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 6.45e-28
Family Ribonuclease PH domain 2-like 0.0001
Further Details:      
 
Domain Number 5 Region: 556-641
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 2.81e-23
Family Eukaryotic type KH-domain (KH-domain type I) 0.0035
Further Details:      
 
Domain Number 6 Region: 622-697
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 6.86e-22
Family Cold shock DNA-binding domain-like 0.0001
Further Details:      
 
Domain Number 7 Region: 241-322
Classification Level Classification E-value
Superfamily Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 6.02e-18
Family Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.0016
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 458817.Shal_3142
Sequence length 704
Comment (Shewanella halifaxensis HAW EB4)
Sequence
MVHVNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFP
LTVNYQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVV
SVDPEISPEVISMIGTSAALSISGIPFNGPLGSARVGYVNGEYILNPTVSQLVDSQLELS
VAGTDSAVLMVESEASALPEEVMLGAVVYGHDQQQVVIQAIKELQAEVNKPVWDWAAPVQ
DETLVAKIKDLAEAGLTEAYQIEVKQDRYAQVGVVKNAAKEALLAENPDANTREIDGLLG
SLEKKVVRGRIIAGNPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGT
ERDAQKIDSIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTA
EEFPYSVRIVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVL
SDILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMD
QAIGSHRGDISEHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIA
SSNGEATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEER
VANVSDYLEVGQEVKVKVMEVDRQGRVRLSMKEAAPKADAPAAE
Download sequence
Identical sequences B0TQ97
458817.Shal_3142 gi|167625054|ref|YP_001675348.1|

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