SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 59689.Al_scaffold_0006_1701 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  59689.Al_scaffold_0006_1701
Domain Number 1 Region: 567-913
Classification Level Classification E-value
Superfamily L domain-like 3.97e-40
Family Leucine rich effector protein YopM 0.026
Further Details:      
 
Domain Number 2 Region: 191-465
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 2.13e-38
Family RecA protein-like (ATPase-domain) 0.056
Further Details:      
 
Domain Number 3 Region: 7-142
Classification Level Classification E-value
Superfamily Toll/Interleukin receptor TIR domain 1.7e-27
Family Toll/Interleukin receptor TIR domain 0.0048
Further Details:      
 
Domain Number 4 Region: 444-549
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 0.0000408
Family CodY HTH domain 0.065
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 59689.Al_scaffold_0006_1701
Sequence length 1168
Comment (Arabidopsis lyrata)
Sequence
MASSGKPSQDQVFINFRGVELRYNFVSHLKKGLKRNGINAFIDTDEDMGQELNILLKRIE
GSKIALAIFSPRYTESDWCLKELAKMKECREQGKLVVIPIFYKVEPSTVKRQKGEFGDNF
RDLVEFIDEETKNNWTEALKSIPLLTGFVLNENSDEDDLIFKVVKEVKKALNIISRAPPN
RLEGTVLSSTVHQKKLESSCGVDLRLKQLEEKLSFGFEDTTRIIGVVGMPGIGKTTLVKK
LYEKLKNEFLSHVLILDIHETSREQGLSYLPTILLEDLLKVKNPMFETVQAAHEGYKDQL
LKTKSLVILDHVSNKEQIAAILGKCDWIKQGSKIVIATGDTSLIHDLVDDIYQVPQLSYK
DSLQQFTHYAIGDQSNAQSFLKLSIDFVHYTKGNPLALKVLGAELLGKDESLWNSKLDSL
SQHHKGRARSSRKIRAQSSSEMLQSVWKECYDGLSQQQQDTLLDIACFRSLDKNYVASLL
DSHDANSTEARIEIEKLMNKFLITISAGKIEMHDTLHMFCKEVGREATAPDGKGRRRLWD
YHTIIDVLENNKGVSVRSIFLDLADLNMNNSLHSQAFNLMSNIRFLKIYNTCCPQECDRD
IMLKFPDGLELPFDELRCLHWLKFPLKELPPDFDPKNLVDLKLHYSEIERVWEGNKDASK
LKWIDFNHSRKLYTLSGLAEARNLQELNLEGCIALATLPQDMENMKCLVFLNLRGCTSLK
YLPEINLISLETLILSDCSKFKVFKVISEKLEAIYLDGTAIKELPSDIRNLQRLVLLNMK
GCKKLKTLPDSLGELKALQELILSGCSKLQSFPEVAKNMNRLEILLLDETAIKEMPNIFS
LRYLCLSRNEKICRLPENISQFSRLKWLDMKYCKSLTYLPKLPPNLQCLDAHGCSSLKSI
VQPLAHVMATEHIHSTFIFTKCDKLEQAAKEEISSYSQRKCQILPSALKLCNKDLVPEIL
FSTCFPGGEIPPWFYHQAIGSKVKFESPQHWKYNKLSGIAFCAVVSFQNCQDQTRTEREH
TNCLSVKFTCTSTTDAEPCTETTWKVGSWTEQGNNKDTTESDHVFIGFTTCLHLRKHLED
QHSSQCAPIVAIFEFSVSNDNTSGEARFEVLKSGFSFVFEPDENKTTIINETPRTNGYLV
DQANGVTNHKMSNGRPSEAHFYTTLQQG
Download sequence
Identical sequences D7LXN6
XP_002873860.1.15461 jgi|Araly1|862192|Al_scaffold_0006_1701 59689.Al_scaffold_0006_1701

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]