SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 644042.JDM1_1767 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  644042.JDM1_1767
Domain Number 1 Region: 16-95
Classification Level Classification E-value
Superfamily GIY-YIG endonuclease 3.53e-20
Family GIY-YIG endonuclease 0.0048
Further Details:      
 
Domain Number 2 Region: 503-586
Classification Level Classification E-value
Superfamily RuvA domain 2-like 2.26e-18
Family Excinuclease UvrC C-terminal domain 0.055
Further Details:      
 
Domain Number 3 Region: 184-236
Classification Level Classification E-value
Superfamily C-terminal UvrC-binding domain of UvrB 0.000000000000392
Family C-terminal UvrC-binding domain of UvrB 0.0048
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 644042.JDM1_1767
Sequence length 604
Comment (Lactobacillus plantarum JDM1)
Sequence
MASAHIEHKLSLLPDLPGCYLMKNLNSQIIYVGKAKNLKNRVRSYFKSSHTGKTARLVSE
IADFEFIVTSTDKEAFLLEITLIQKHQPYFNIKLKKGTGYPYIKITNERDPQILIVSDVR
KDGGYYFGPYPNVYAAQETVNFIQKVYPLRRCHGFQKRPCLYYHMGQCLGACFKTVPVAE
YDAQIKRIKSFLNGHVETVKKQLTKRMDQAAADLEFERAAELRDQLNYIEMTVEKQKIIS
NDNTPRDLFNFYLDKGWLSIQVFFIRQARLMKREKRLFPVVSTAPEEMTSFILQFYNRKN
NVLPREVLVPNGLDKQVLSDILGIPVRTPQRGQKKDLLDMAQKNARIVLEEKFRLLELDE
RKTTGAMQEITDALGIPAGHKIEAFDHSHIQGADLVSAMVVFTDGQPNKKLYRKYKLRTV
DHADEAASTREVIRRRYTRLLKEHAALPDLILMDGGEIQLEAAKDVLENELGIATPVAAM
VKNDHHKTADLLASAGDQHLHLDPKSQGFYLLQRIQDEVHRFAITFHRQVHTKHSLSSRL
DEIPGVGPKTRNKLLRKFGSMSKIAGASLEEIQSLGIAKNVAQTVKFSLAGGGVTPKHYQ
KGAT
Download sequence
Identical sequences A0A166GLT2 A0A2J6U5I6 A0A2K3C855 D7VBW6 M4KMB6 Q88VE9
gi|448821635|ref|YP_007414797.1| gi|254556934|ref|YP_003063351.1| gi|380032868|ref|YP_004889859.1| 220668.lp_2109 644042.JDM1_1767 WP_003640789.1.100207 WP_003640789.1.102085 WP_003640789.1.1220 WP_003640789.1.12283 WP_003640789.1.12549 WP_003640789.1.1364 WP_003640789.1.13966 WP_003640789.1.14222 WP_003640789.1.15989 WP_003640789.1.17493 WP_003640789.1.19463 WP_003640789.1.20190 WP_003640789.1.2169 WP_003640789.1.22404 WP_003640789.1.22467 WP_003640789.1.25460 WP_003640789.1.25482 WP_003640789.1.27617 WP_003640789.1.28208 WP_003640789.1.28597 WP_003640789.1.29036 WP_003640789.1.30329 WP_003640789.1.31165 WP_003640789.1.33465 WP_003640789.1.34594 WP_003640789.1.34840 WP_003640789.1.37210 WP_003640789.1.37302 WP_003640789.1.37367 WP_003640789.1.37993 WP_003640789.1.4007 WP_003640789.1.42053 WP_003640789.1.42956 WP_003640789.1.43944 WP_003640789.1.44129 WP_003640789.1.44182 WP_003640789.1.45255 WP_003640789.1.48352 WP_003640789.1.49466 WP_003640789.1.49499 WP_003640789.1.49644 WP_003640789.1.50091 WP_003640789.1.50648 WP_003640789.1.52115 WP_003640789.1.53564 WP_003640789.1.54513 WP_003640789.1.57 WP_003640789.1.59418 WP_003640789.1.60571 WP_003640789.1.61917 WP_003640789.1.6273 WP_003640789.1.64570 WP_003640789.1.6617 WP_003640789.1.66204 WP_003640789.1.66243 WP_003640789.1.68320 WP_003640789.1.6836 WP_003640789.1.68648 WP_003640789.1.68947 WP_003640789.1.69847 WP_003640789.1.69983 WP_003640789.1.71240 WP_003640789.1.71366 WP_003640789.1.71807 WP_003640789.1.731 WP_003640789.1.73311 WP_003640789.1.73499 WP_003640789.1.74868 WP_003640789.1.76549 WP_003640789.1.76771 WP_003640789.1.76822 WP_003640789.1.77972 WP_003640789.1.78144 WP_003640789.1.8010 WP_003640789.1.81615 WP_003640789.1.83366 WP_003640789.1.83620 WP_003640789.1.83647 WP_003640789.1.83777 WP_003640789.1.84419 WP_003640789.1.85206 WP_003640789.1.85836 WP_003640789.1.86479 WP_003640789.1.88099 WP_003640789.1.89420 WP_003640789.1.89637 WP_003640789.1.90208 WP_003640789.1.90300 WP_003640789.1.91137 WP_003640789.1.91683 WP_003640789.1.92145 WP_003640789.1.92717 WP_003640789.1.93409 WP_003640789.1.93688 WP_003640789.1.94667 WP_003640789.1.95554 WP_003640789.1.9589 WP_003640789.1.9731 WP_003640789.1.98090 WP_003640789.1.98190 WP_003640789.1.9834 WP_003640789.1.98401 YP_004889859.1.96219 gi|501147026|ref|YP_007987364.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]