SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 644223.PAS_chr4_0600 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  644223.PAS_chr4_0600
Domain Number 1 Region: 123-404
Classification Level Classification E-value
Superfamily vWA-like 2e-66
Family Trunk domain of Sec23/24 0.000000798
Further Details:      
 
Domain Number 2 Region: 3-62,421-518
Classification Level Classification E-value
Superfamily beta-sandwich domain of Sec23/24 2.22e-53
Family beta-sandwich domain of Sec23/24 0.00028
Further Details:      
 
Domain Number 3 Region: 528-631
Classification Level Classification E-value
Superfamily Helical domain of Sec23/24 2.75e-40
Family Helical domain of Sec23/24 0.0000222
Further Details:      
 
Domain Number 4 Region: 632-779
Classification Level Classification E-value
Superfamily C-terminal, gelsolin-like domain of Sec23/24 1.1e-39
Family C-terminal, gelsolin-like domain of Sec23/24 0.0000171
Further Details:      
 
Domain Number 5 Region: 45-117
Classification Level Classification E-value
Superfamily Zn-finger domain of Sec23/24 3.4e-20
Family Zn-finger domain of Sec23/24 0.00015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) 644223.PAS_chr4_0600
Sequence length 782
Comment (Pichia pastoris GS115)
Sequence
MADIYEIEEIDGVRFNWNSFPVTKIESENISMPLGCLYTPLNERDYLPVAQYDPVLCRQC
HAALNPYAMIDLTAKVWSCPVCSSRNTLPINYTEISTENLPLELNPQSSTIEYILSRAQP
HPPPAYIYVVDLCQEQSELDSMKETLIASLPLHPPGALIGLVTFDSVVNVHDLSTRTCLK
KYVFNGTKEYTSIEIQRQLGIEKSGTIPWAKQLQNPGYNAVTRFFLPVAEKDAEFQIIRA
IERLEVSKWTYPQGQRPTRVTGAALSVATSLAEGSYADCACKITLFSAGPCTLGPGTIVG
PELKEPIRSHNDMDKGTASHYKKSYQFYNRLAVKGSNNRKDLKDKFADPSSSTTYSVDIF
AGCYDQVGIYEMRSLANLTGGVLVVTDSFQTSILKNSFFACFNKDEEGYPMTYSDGILDV
LTSNRLKVSGVIGHAVSMKQNGNNISDTPIGEGLTNKWRLCSLTPKNTYAIFFDMMTVGT
SDQRSSSVNEVCIQFTTTYRHTNGQMRTRVTTLKRGTSNTVPLANSFDQEAAAVLYARLI
VNKIENGNEYSDLLRWIDKSLVKLCTVFGDYSKNDAGTFRLSTKFSLLPQFIYHLRRSQF
LQVFNCSPDETAFYHHTILRTDIRDSLVMIQPTLTQFSADGSEPVPVLLDSASLKQDCVL
LLDAFFFIVIYYGSVAAAWRDANYPREEFPGVYAMIEKAQEEAASLISDRFPLPKYVTTD
EGKSQARFLYSKLNPSENDTETTGSALAGYTASAHEAIVQSDDVSLNTFFTHLSRLVVQN
SS
Download sequence
Identical sequences C4R8D5 F2QYR1 Q0PVE0
644223.PAS_chr4_0600 XP_002494039.1.19831 gi|254573860|ref|XP_002494039.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]