SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 10141.ENSCPOP00000001705 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  10141.ENSCPOP00000001705
Domain Number 1 Region: 45-134
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 6.87e-34
Family SCAN domain 0.0000575
Further Details:      
 
Domain Number 2 Region: 425-482
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.1e-26
Family Classic zinc finger, C2H2 0.0034
Further Details:      
 
Domain Number 3 Region: 481-538
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 4.12e-26
Family Classic zinc finger, C2H2 0.0039
Further Details:      
 
Domain Number 4 Region: 525-583
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 4.69e-22
Family Classic zinc finger, C2H2 0.0032
Further Details:      
 
Domain Number 5 Region: 369-426
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.63e-21
Family Classic zinc finger, C2H2 0.0074
Further Details:      
 
Domain Number 6 Region: 331-383
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 4.29e-19
Family Classic zinc finger, C2H2 0.0043
Further Details:      
 
Domain Number 7 Region: 227-283
Classification Level Classification E-value
Superfamily KRAB domain (Kruppel-associated box) 0.000000314
Family KRAB domain (Kruppel-associated box) 0.0084
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 10141.ENSCPOP00000001705
Sequence length 589
Comment (Cavia porcellus)
Sequence
MAAESSKPSSASSPQDQTPEEDLIIIKVEEDHGWEQESSLHENNSPGQELFRLRFRQLCY
QETLGPREAMIQLRALCHQWLRPDLNSKEQIMELLVLEQFLTILPKDLQALIKDHQLENG
EEVVTLLEDLERQIDVLGRQVPAHVQKHRVLWEELTPSQPATEPPSTPLQPVVAGCKSPV
LQEKDKSCLIHSSFLPSAISTSQSSSLSQKGSSEDQKMTVTPRDAEFQTLEKTEDVAVSI
VQEKWILDPVKKSLSIDNRPENCGHVVSLGGETSNENKELASKQVISAEIQPHGETAARC
NGDVIRVLERGEAQDLLGRLERQRGNPTQERRHKCDECGKTFAQSSGLVRHWRIHTGEKP
YQCNVCSKAFSYRSALLSHQDIHNKVKRYHCKECGKAFSQNTGLILHQRIHTGEKPYQCN
QCGKAFSQSAGLILHQRIHSGERPYECSECGKAFSHSSHLIGHQRIHTGEKPYECDECGK
TFRRSSHLIGHQRSHTGEKPYKCNECGRAFSQKSGLIEHQRIHTGERPYKCKECGKAFNG
NTGLIQHLRIHTGEKPYQCNECGKAFIQRSSLIRHQRIHSGEKSESIGV
Download sequence
Identical sequences 10141.ENSCPOP00000001705 ENSCPOP00000001705 ENSCPOP00000001705

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]