SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 281687.CJA27103 from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  281687.CJA27103
Domain Number 1 Region: 240-401
Classification Level Classification E-value
Superfamily Ribonuclease H-like 2.43e-36
Family Retroviral integrase, catalytic domain 0.023
Further Details:      
 
Weak hits

Sequence:  281687.CJA27103
Domain Number - Region: 2-55
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 0.000114
Family Reverse transcriptase 0.088
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 281687.CJA27103
Sequence length 894
Comment (Caenorhabditis japonica)
Sequence
MMFALRRFKTIVYGTPVVVCTDHKPLISLLKGSPLADRLLRWSLEILEFNVKIVFVAGKA
NVVADALSRGGAPGVDPTDGETTELTSIINEVRTECEKEDFLNTKNWFKYHQQENEGWRK
VIDELEKGEKQGAVKIEGMKELVKLSDFVLIGKSLRNTENPSCNRMVVPLCVRERLIKEY
HEGALAGHFGTEKLVRQLSRKFMWPKMRATIEKFVKACPKCICTNDHPKLVAPLTPYKTS
YPLEIVACDLIDVGLSIQGNRYVLTIVDLFTKYGTAVPIPDKKAETVLKAFVDRWAIGEG
RIPHTLLTDQGKEFANGMFEQFTKMLKVKHIMTKGYNSRANGAVERFNKTLMHIVKKKIA
LPVEWDDQLPYAIYAYNSIAHKTTGDTPYFLMTGRDPQGPLIMEGEDADGINYSDMEEYK
CVLTQELLKAHRSAKEHARREWEEHKRLFDLKHKVHNRRYPEPGSRVLVEIPSEKLGAKC
PKLINKWKGPYRVISVSENSATVRPVMGNRKETLIIPFDNLRVIPVKMKQDVIIETTKGR
AGVKEKIKPYGDVGSDIVLNLEIKHDNYFSEILFCRCPTPCQFFPADAQKAKTTSPVQLH
RMHQWLEHNPALAANPKDLQVLSKQHFPGSSSPPSLDTIRSLAWCPTIIQTLSGVPMWVK
AWNSVYSDLARIHLKRSSFENKLWIVTTPGVDHKPIPLSASRLSSLSESADLAKMVTNVE
KEKPTAILLVVPFRVNPDELGKKLISELPGDVRVAVVCAPTAIEDYSVAAELEAMLQCMA
SPERPVHLIPPQYRVQSSRNRKLWEIGDSDTIINYWQAVLLVAKEQEVPIELKLRMEEGD
SVSKPVVNVCSTGLSTRPRRRHQGRQSGTGHPTTTTDSLILPPNRGDQRNIGAS
Download sequence
Identical sequences 281687.CJA27103 CJA27103

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]