SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for 348780.NP4106A from STRING v9.0.5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  348780.NP4106A
Domain Number 1 Region: 7-89
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 3.16e-22
Family Transcription factor E/IIe-alpha, N-terminal domain 0.002
Further Details:      
 
Weak hits

Sequence:  348780.NP4106A
Domain Number - Region: 116-147
Classification Level Classification E-value
Superfamily RNA polymerase subunits 0.000732
Family RBP12 subunit of RNA polymerase II 0.033
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 348780.NP4106A
Sequence length 175
Comment (Natronomonas pharaonis)
Sequence
MAFEDLLNDPVIQKYLHELVGPTGMPVAAAPPDGEVTDEELAEELGLELNDVRRALFILY
ENDLASYRRLRDEDSGWLTYLWTFQYENIPEQLEEEMHRLLEALENRRQYESENEFYLCG
ECQLRFEFDEAMEFGFECPECGGRLESMENDRLVNAMEQHIEALRDELHVETAEA
Download sequence
Identical sequences Q3IP08
348780.NP4106A WP_011323760.1.57290 gi|76802687|ref|YP_330782.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]