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Domain assignment for 39947.LOC_Os12g35130.1 from STRING v9.0.5

Domain architecture


Domain assignment details

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Strong hits

Sequence:  39947.LOC_Os12g35130.1
Domain Number 1 Region: 525-954
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 2.78e-174
Family Reverse transcriptase 0.0000201
Further Details:      
 
Domain Number 2 Region: 1127-1286
Classification Level Classification E-value
Superfamily Ribonuclease H-like 6.58e-43
Family Retroviral integrase, catalytic domain 0.013
Further Details:      
 
Domain Number 3 Region: 379-486
Classification Level Classification E-value
Superfamily Acid proteases 3.82e-16
Family Retroviral protease (retropepsin) 0.031
Further Details:      
 
Domain Number 4 Region: 319-353
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00000000645
Family Retrovirus zinc finger-like domains 0.0034
Further Details:      
 
Weak hits

Sequence:  39947.LOC_Os12g35130.1
Domain Number - Region: 1398-1470
Classification Level Classification E-value
Superfamily Chromo domain-like 0.000336
Family Chromo domain 0.018
Further Details:      
 
Domain Number - Region: 236-268
Classification Level Classification E-value
Superfamily Ribosomal protein L29 (L29p) 0.0563
Family Ribosomal protein L29 (L29p) 0.011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) 39947.LOC_Os12g35130.1
Sequence length 1470
Comment (Oryza sativa)
Sequence
MDEVGRRWTFSRANEGYTSCGPVVNTRSNGNGPNNPNNNNNEENPTLAQVLAQQTQLMNM
MMQQLQNQQNQGNNHAPPQNKLAEFLRVRPPIFSSTTNPVEAGDWLHAIEKKLDLLQCTD
QEKVSFASHQLHGPAFEWWDHFRLNRTTTEPITWLEFTAAFRKTHIPSGVVSLKKKEFRS
LTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLEGLNDELSYPLMTGDYSDFQKLV
DKAIRQEDKYNRMEQKKRRIAQLKTQQGNIQKPRLTLGPQSMPQGGSSSIVRPQRQFFNN
NAGNNIRNQAPRPVAAPAQQQPVKREQGSKPVVCFNCGDPGHYADKCPKPRRVKVVPAQS
NSAVPASKARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGM
EVEDLRRPLMVSTPSNQALSLQRSPSVRIEIQGVPFRANLILLESKDLDVILGMDWLARY
KGVIDCANRKVTLTSNDGRVVTVHALSSESLRSRLNQITLEEIPIVREYPDVFPDDLPGM
PPKRDIEFRIDLVLGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSLWGAPVIF
VEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKE
EDIPKTAFTTRYGLFECTVMSFGLTNAPVFFMNLMNKVFMEYLDKFVVVFIDDILIYSRT
KEEHEEHFRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWK
QPKTVSEIRSFLGLAGYYRRFIENFSKITKPMTRLLQKDVKYKWSEECEQSFQELKNRLI
SAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAV
VHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKAN
VVADALSRKGYCNATEGRQLPLELCKEFERLNLGIVSRGFVAALEAKPTLIDQVRETQIN
DPDIQEIKKNMRRGKSIGFLEDEQGTVWLGERICFPDNKDLKNAILKEAHDTLYSIHPGS
TKMYQDLKERFWWASMKREIAEYVAVCDICQRVKAEHQKPAGLLQPLKIPEWKWEEIGMD
FITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYFGSRLAELYMARIVCLHGVPKKIVS
DRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDK
NLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKII
QERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYKIV
SRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANLEQIEVQEDLTYVEKPIRIL
EIDERRTRNRVIRFCKVQWSNHSEEESTWE
Download sequence
Identical sequences Q2QPA7
39947.LOC_Os12g35130.1 LOC_Os12g35130.1|13112.m03594|protein LOC_Os12g35130.1|PACid:21935194

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