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  Home > Genomes > Tetraodon nigroviridis 69_8 > ENSTNIP00000012483

Domain assignment for ENSTNIP00000012483 from Tetraodon nigroviridis 69_8

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSTNIP00000012483
Domain Number 1 Region: 441-697
Classification Level Classification E-value
Superfamily YWTD domain 1.05e-62
Family YWTD domain 0.00000077
Further Details:      
 
Domain Number 2 Region: 744-999
Classification Level Classification E-value
Superfamily YWTD domain 3.01e-56
Family YWTD domain 0.00000169
Further Details:      
 
Domain Number 3 Region: 1356-1617
Classification Level Classification E-value
Superfamily YWTD domain 6.41e-51
Family YWTD domain 0.0000042
Further Details:      
 
Domain Number 4 Region: 1051-1303
Classification Level Classification E-value
Superfamily YWTD domain 1.44e-50
Family YWTD domain 0.00000614
Further Details:      
 
Domain Number 5 Region: 264-304
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000000785
Family LDL receptor-like module 0.00084
Further Details:      
 
Domain Number 6 Region: 354-433,689-738
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.0000000000581
Family Growth factor receptor domain 0.016
Further Details:      
 
Domain Number 7 Region: 228-266
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000249
Family LDL receptor-like module 0.0008
Further Details:      
 
Domain Number 8 Region: 143-183
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000353
Family LDL receptor-like module 0.00068
Further Details:      
 
Domain Number 9 Region: 310-346
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000537
Family LDL receptor-like module 0.0014
Further Details:      
 
Domain Number 10 Region: 68-106
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000733
Family LDL receptor-like module 0.00078
Further Details:      
 
Domain Number 11 Region: 105-142
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000275
Family LDL receptor-like module 0.00091
Further Details:      
 
Domain Number 12 Region: 187-225
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000576
Family LDL receptor-like module 0.0011
Further Details:      
 
Domain Number 13 Region: 1310-1356
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000000681
Family EGF-type module 0.0063
Further Details:      
 
Domain Number 14 Region: 1004-1046
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000112
Family EGF-type module 0.011
Further Details:      
 
Domain Number 15 Region: 26-68
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000157
Family LDL receptor-like module 0.001
Further Details:      
 
Weak hits

Sequence:  ENSTNIP00000012483
Domain Number - Region: 1617-1654
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000157
Family EGF-type module 0.017
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSTNIP00000012483   Gene: ENSTNIG00000009608   Transcript: ENSTNIT00000012674
Sequence length 1926
Comment pep:novel chromosome:TETRAODON8:5:11802163:11833650:1 gene:ENSTNIG00000009608 transcript:ENSTNIT00000012674 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
FSRSNSPLCLSAIHVIHGVRCSTECSCGRNHFTCAVSAFGECTCIPAQWQCDGDNDCGDH
SDEDGCMLPTCSPVDFHCDNGKCIRRSWLCDGDNDCEDDSDEQDCPPRECEEDEFQCQNG
YCIRSLWHCDGDNDCGDNSDEQCDMRKCSDKEFRCTDGSCIAEHWYCDGDTDCKDGSDEE
NCPSDVMAATCSVEEFQCAYGRCILDIYHCDGDDDCGDWSDESDCSSHQPCRSVEFMCSS
GMCINAGWRCDGEFDCDDQSDEKNCTTSMCTADQFRCGNGRCIRLSWRCDGEDDCADHSD
EEGCEKTESPPCAPDQFQCGNGRCIGQRKVCNEVNDCGDGTDEQPHHDCRPRSSEGNCNQ
NNGGCSQKCQMVRGLVQCTCHTGYRLMDDGKACQDVDECAEEGYCSQGCTNTEGAFQCWC
VQGYELRPDKRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHSQE
LVFWSDVTLDRIMKANLNGSNVEEVVSTGLESPGGLAIDWIHDKLYWTDSGTSRIEVANL
DGTHRKVLLWQNMEKPRAIALHPIEGKIYWTDWGNTPRIEYANMDGSNRRIIADTHLFWP
NGLTIDYAGRRMYWVDAKHHVIEKADLDGRNRKAVISHGLPHPFAITVFEDSLYWTDWHT
KSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGGRNRCGSNNGGCSHLCLPSNKT
YTCACPTGFKKVDHHNCADGLDKFLLFARRTDIRRISFDTEDMSDDVIPLADVRNAVALD
WDAKDGYIYWTDVTTDSINRALWNGTQQEVVVDTSLESPAGLAIDWVTSKLYWTDAGTDR
IEVSNADGSMRTVLIWENLDRPRDIVVDPIGGFMYWTDWGANPKIERAGMDASSRVVIIS
SNLTWPNGLAIDYDTKRLYWADAGMKTVEYGNFDGSGRQVLIGSQLPHPFGLTVHEDKLY
WTDWQSKSIQSADKLTGLGRQTLTENLENLMDIHMFHRQRETVHNPCLVNNGGCSHLCLL
APAPKASSCACPTGINLQTDGKTCTPGMSSFLIFARRTDIRMVSLDIPYFADVVLAVNTS
MKNTIAIGVDPKEGKVYWSDSTLKKISRASISGKAQEDIVSTGLMTTDGLAVDAVGRKIY
WTDTGTNRIEVANLDGSMRKILVWQNLDSPRAIALYNEMGYLYWTDWGEHAKLERSAMDG
SGRVVLISNNLGWPNGLAIDTAGSQLLWADAHTERIEAADLNGQNRRTLVTPVQHPYGLT
LLGSHIYWTDWQSRSIQRADKTTGTNTITVRSNLPGLMDIQAVDMERPLGFNKCGRRNGG
CTHLCLPRPNGTSCACPTGILLKGDGRSCDDSPETYLLFSNRISVRRISLDTNDHTDVHV
PVPELHNVISLDYDSVDGKLYYTDVTLDVIRRANLDGSGMETVISQGLKTTDGLAVDWVA
RNMYWTDTGRNTIEVARLDGTGRKVLINNSLDEPRAIAVFPSKGFLFLIDWGHIAKIERS
HLDGSDRKVLINTDLGWPNGLTLDYDTRRIFWVDAHLDRIESSDLNGKLRQILSKPVSSP
LTPFSRLSQQDRWIYWTDWQTKSIQRVDKHTGRNKETVLANVEGLMDIIVVSPHRQTGTN
LCGVNNGGCTHLCFAKTNSFVCACPDEPDGRPCSTSYVPTVPAGATSSTPVPNKIPNVPT
ETPRRGPTLVKKCNRTKSVTEHLKPSAFGFCSCTEKNLNEEGCLNSVVTAPHGEGLHISY
VIGGVLTILAILILIAALIIYRHKKSKFAEPGMSNLTYSNPSYRTSTQEVKIETSQKPPI
YNQLRYKKEQSIQGGVDGGYTKEKIRIVEGVCLLSNEELYWDDLKQIKPSRGGLHTCMRT
DTVSLQASSASLDDGETEQLLQEEASECSSITTLTPSAITPQRHSQHTLPDTGWASTRKP
STESEV
Download sequence
Identical sequences H3CW49
ENSTNIP00000012483 99883.ENSTNIP00000012483 ENSTNIP00000012483

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.