SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for APC27959 from TargetDB

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  APC27959
Domain Number 1 Region: 120-282
Classification Level Classification E-value
Superfamily Ribonuclease H-like 1.64e-38
Family Retroviral integrase, catalytic domain 0.012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) APC27959
Sequence length 288
Comment $ MCSG $ SQ21659 $ PDBT67402 $
Sequence
MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCDSVVLAAFTRS
KQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKFSPVSYRAHGLPVSENLLE
QDFYASGPNQKWPGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLPCDALQMA
LWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVE
CIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENQNLA
Download sequence
Identical sequences A0A127GP39 D2A702 I6GTY6 Q7C053
APC27959 gi|24114270|ref|NP_708780.1| NP_708780.1.23235 198214.SF3006 198215.S3056 198215.S3210 gi|30064188|ref|NP_838359.1| gi|30064320|ref|NP_838491.1| gi|384544416|ref|YP_005728479.1| gi|384544570|ref|YP_005728633.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]