SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for APC88878 from TargetDB

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  APC88878
Domain Number 1 Region: 90-464
Classification Level Classification E-value
Superfamily PLP-dependent transferases 4.47e-81
Family AAT-like 0.00067
Further Details:      
 
Domain Number 2 Region: 3-78
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 0.00000000000000445
Family GntR-like transcriptional regulators 0.027
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) APC88878
Sequence length 473
Comment $ MCSG $ SQ133447 $ PDBT111049 $
Sequence
MPMYKSDQLAHQLKSLIEKNIWKAHTKLPSLREQVESSGFSLMTVMNAYQKLEAQGLIYS
KEKSGYFVAEQTKPALDSASTLAPKIEINSSVFKYLKSIQTPNLVSLGSAFPDSELLLPI
KLRQIVSQLARYPKSYDQTTNLPPGNLALRKIIAQRYCMQGIPTQADDIVITSGGLDALN
LSLQALTQPGDYIVLQQTTFYGAWQAAERLGLKVITVPEHAHCGIDVDAFEQLILHYPVK
VCWMMFNAHNPLGFTVSEEIKFKIAKLLHQHHIHLIEDDVYEELFDGLNKPLPMKYYDQN
NLVMHCSSFSKTLGAGFRVGWVYAGKYSEHIQHLQLMSTISANTLVQNALVEFLSSHHYE
KHLRSLRLKLKKNKKRFYHYLKQNLPTQCRIHYELGGYFLCIMLPEQASSEEIYKTLLNQ
NIAVAPSILFNYSQQHQQFIRINCSFDWSNHIQSALDVLTITLKQLSNAKLET
Download sequence
Identical sequences Q6FAQ9
gi|50085166|ref|YP_046676.1| APC88878 62977.ACIAD2032

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]