SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for NYSGXRC-10334j from TargetDB

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  NYSGXRC-10334j
Domain Number 1 Region: 3-268
Classification Level Classification E-value
Superfamily PHP domain-like 7.85e-41
Family PHP domain 0.0096
Further Details:      
 
Weak hits

Sequence:  NYSGXRC-10334j
Domain Number - Region: 1019-1089
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.00371
Family Cold shock DNA-binding domain-like 0.089
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) NYSGXRC-10334j
Sequence length 1186
Comment $ NYSGXRC $ SQ107621 $ PDBT182855 $
Sequence
MSFTHLHVHTEFSLLDGSGKIKEMAAQAKKLGMDALAITDHGVMYGVIDFYRACLAEGIK
PIIGCEVYVAPNSRFDKEGSASEERYHHLVLLAENDIGYHNLIKIVSRGFTEGFYYKPRV
DHELLKEYSEGIIALSACLAGEVAVMLRRNFFEEAKASALKLQEIFGAGNFFLELQDHGY
PEQKSVNQGLLRISEETNIPLVATNDIHYTYDTDETAHDILLCIQTQKKVTDEDRMRYAG
GQFYMKSPEEMRELFPYALQALQNTEEIAKRCNVTIEFGHYKLPKYDVPAPYTVSPGSGS
TDDEGDISASQNISTNTDILAREYLRKLCEEGLVRRYKDPSTELWDRLNYELETIENMGF
VDYFLIVWDFIKYAKDNDIIVGPGRGSAAGSVVSYCLEITNIDPIKYSLLFERFLNPERL
TMPDIDIDFCFERRQEVIDYVVSKYGKDRVVQIVTFGTMAARAVIRDVGRALDMPYASVD
VVAKMIPTELGITIEKALNINPDLKKLYESDPEVMHLIDMSKRLEGLPRHTSMHAAGVVI
SNAPADEYVPLSRSSDDSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVLLVNQAKAR
LGETEENFLNIDEIDYNDSKVLDLISSAKTEGIFQLESSGMKSFMKELKPQNLEDIIAGI
SLYRPGPMDFIPKYIQGKNNQKSIQYECKELEPILSPTYGCIVYQEQVMQIVRELAGYSF
GRSDLVRRAMSKKKASVMEKERQSFVYGNVEEGVPGCISKGIPEAVANHIYDEMTDFAKY
AFNKSHAAAYAVVSYQTAYLKCYYPVEFMAALMTSVIDNPSKVAEYIYTCRQMGIKLLPP
DINDGYATFTVSGENIRYGLSAIKGLGRPVIDALVIEREENGPYLNLKDFASRLSGKEVN
KRTIESFIKSGAFDSMPGTRKQLMHVYVGVLDGVSQEKKRAMTGQMSLFDLDGDAKVMNE
EIIFPEVGEYSKEELLAFEKEVLGIYVSGHPLEAYELLLKRNATANTADFIVEEETNTVK
VADGDTVTVGGMITSRTLKTTRTNAVMAFITLEDMFGTMEVIIFPRDYEKFKYTLEIDNR
VFIKGKVAVEEDKPAKLICQSITPFADISKELWVKFSDKEAFLNNEKALYEIIKNYDGND
RITVYCEKEKAIKKLPLSQSVIIEEGLLENLRNAFSEENIKVVEKL
Download sequence
Identical sequences A9KSS8
WP_012198365.1.8979 357809.Cphy_0335 NYSGXRC-10334j gi|160878493|ref|YP_001557461.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]