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Domain assignment for gi|28210966|ref|NP_781910.1| from Clostridium tetani E88

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|28210966|ref|NP_781910.1|
Domain Number 1 Region: 293-465
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 3.24e-46
Family Ribonuclease PH domain 1-like 0.0000138
Further Details:      
 
Domain Number 2 Region: 6-142
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 1.77e-43
Family Ribonuclease PH domain 1-like 0.0000219
Further Details:      
 
Domain Number 3 Region: 143-234
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 1.57e-25
Family Ribonuclease PH domain 2-like 0.0032
Further Details:      
 
Domain Number 4 Region: 450-559
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 3.79e-24
Family Ribonuclease PH domain 2-like 0.00017
Further Details:      
 
Domain Number 5 Region: 607-691
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 3.77e-21
Family Cold shock DNA-binding domain-like 0.00048
Further Details:      
 
Domain Number 6 Region: 236-317
Classification Level Classification E-value
Superfamily Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 2.48e-17
Family Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.0022
Further Details:      
 
Domain Number 7 Region: 554-620
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 8.35e-16
Family Eukaryotic type KH-domain (KH-domain type I) 0.0038
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|28210966|ref|NP_781910.1|
Sequence length 705
Comment polynucleotide phosphorylase [Clostridium tetani E88]
Sequence
MSHVLETDIAGRTLKVEYGKVGMLSNCAILVSYGDTVVLINANASKEPRDGIDFFPLSVE
YEERLYSVGKIPGGFIKREGRPTENAILHARAIDRPLRPLFPKGYRNDVQIVCTVLSVES
DNQPDILAMNGASLALCLSSIPFTTPVANVSVGLINGDFILNPTQSQREESILNLTVSAT
KERVMMIEAGAEEVDEDTMYNAIRFGFEQCQKIVEFQEEAMRRFGKEKVEPVLYLVDKDI
EKEVREFAFPMVKEAMYISDKDLRNEKIDEVKEKVKEEFEEKYPENDSDISEALYKMQKE
VVRNMILREKRRPDERAFDEIRKISCEVGLLPRTHGTGLFTRGLTQVMTAATIGPLADVQ
ILDSIEDEEFKRYMHHYNFPSYSVGETRPLRGPGRREIGHGALAEKALEPLIPSEEDFPY
TIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTNDDLTEEKILTDI
QGIEDFFGDMDFKVAGTEKGITALQVDTKISGLSDNCIKETLIKAKDARMYILGKIKECI
PEHRAELSPYAPRVYTMTIAPEKIRDVIGAGGKTINKIIGETGVQIDIKEDGKIYVMSSD
SVGANRALKMINDLTKDVEAGEIYLGKVTRTTNFGAFVEILPGKEGLVHISKLDFTRVNK
VEDVVSVGDEILVKVTDIDDQGRINLSRRDAIKKEEDEKTKENNH
Download sequence
Identical sequences A0A1T4P308 Q895J3
gi|28210966|ref|NP_781910.1| 212717.CTC01280 WP_011099509.1.12609 WP_011099509.1.27827 WP_011099509.1.49058 WP_011099509.1.81004 WP_011099509.1.83101 WP_011099509.1.96257

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