SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSOARP00000004788 from Ovis aries 76_3.1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSOARP00000004788
Domain Number 1 Region: 6-84
Classification Level Classification E-value
Superfamily Sm-like ribonucleoproteins 1.8e-30
Family LSM14 N-terminal domain-like 0.0000249
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSOARP00000004788   Gene: ENSOARG00000004475   Transcript: ENSOART00000004869
Sequence length 463
Comment pep:known_by_projection chromosome:Oar_v3.1:14:43901918:43952959:1 gene:ENSOARG00000004475 transcript:ENSOART00000004869 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDE
VFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQSSLGSSTSSFQSVGSYGPFGRMPTY
SQFSPSSLVGQQFGAVGVAGSSLTSFGTEASSSSALSQSSAVGSAFTQDTRALKTQLSQG
RSSPQLDPLRKSPTMEQAVQTASAHLPAPAPVGRRSPVSTRPLPSTSQKPIENQEHRRAE
VHKVSRPENEQLRNDSKRQIVPGAPSAPRRGRGGHRGGRGRFGIRRDGPMKFEKDFDFES
ANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNADEEDPLGPN
CYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFRGG
RGRGSGRGSAFTSPRGFRGGFRGGRGGREFADFEYRKDNKVAA
Download sequence
Identical sequences W5P2Y8
XP_004015197.1.66739 XP_011975759.1.54773 ENSOARP00000004788

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]