SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSTNIP00000001615 from Tetraodon nigroviridis 76_8

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSTNIP00000001615
Domain Number 1 Region: 7-91
Classification Level Classification E-value
Superfamily Integrin domains 9.94e-27
Family Integrin domains 0.0022
Further Details:      
 
Domain Number 2 Region: 251-330
Classification Level Classification E-value
Superfamily Integrin beta tail domain 4.45e-16
Family Integrin beta tail domain 0.0026
Further Details:      
 
Domain Number 3 Region: 168-206
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000137
Family Integrin beta EGF-like domains 0.0046
Further Details:      
 
Domain Number 4 Region: 135-169
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000363
Family Integrin beta EGF-like domains 0.017
Further Details:      
 
Domain Number 5 Region: 210-250
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000865
Family Integrin beta EGF-like domains 0.014
Further Details:      
 
Weak hits

Sequence:  ENSTNIP00000001615
Domain Number - Region: 97-124
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00446
Family Integrin beta EGF-like domains 0.045
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSTNIP00000001615   Gene: ENSTNIG00000001077   Transcript: ENSTNIT00000000020
Sequence length 393
Comment pep:known_by_projection chromosome:TETRAODON8:2:9392535:9394849:-1 gene:ENSTNIG00000001077 transcript:ENSTNIT00000000020 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
QKLSSKVTLTHDRLPKDVQILYTPDCQAAGQPGPSEGVCDNVKEKQEIAFNVTVVANSCM
KDQSFTVRVLGIKDTLTVTVSTNCECDCRDTQDSQQQACSGRGSLKCGVCSCNDGFIGQS
CECSIGNKDEQTLRDSCRRDKGVECEGRGDCVCGRCHCHGSYHGDFCQCDDEHCERFQNK
LCGGNGKCSCGQCRCNEGYEGSACQCKVSQEACQTPNNTVCYGRGKCTCSRCECNDGYQR
PHCKTCLGCPDPCQTKLKCIECLGFNSGPFKANCSDACGSVTKVDRFTGESKQCELKDSE
GCWIKFSLEQIVGPDDYYARIQSERVCPEPLNTNAIIGGSIALVALIGILVLMVIKLLIW
MNDRKEYKKFEKEQKKAKWNDGDNPLFQDATTT
Download sequence
Identical sequences H3C049
99883.ENSTNIP00000001615 ENSTNIP00000001615 ENSTNIP00000001615

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]