SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSTNIP00000020514 from Tetraodon nigroviridis 76_8

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSTNIP00000020514
Domain Number 1 Region: 168-486
Classification Level Classification E-value
Superfamily DNA repair protein MutS, domain III 3.66e-58
Family DNA repair protein MutS, domain III 0.00045
Further Details:      
 
Domain Number 2 Region: 490-725
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 2.46e-43
Family ABC transporter ATPase domain-like 0.0000145
Further Details:      
 
Domain Number 3 Region: 6-178
Classification Level Classification E-value
Superfamily DNA repair protein MutS, domain II 0.00000196
Family DNA repair protein MutS, domain II 0.019
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSTNIP00000020514   Gene: ENSTNIG00000017376   Transcript: ENSTNIT00000020746
Sequence length 790
Comment pep:known_by_projection chromosome:TETRAODON8:10:5572813:5577743:-1 gene:ENSTNIG00000017376 transcript:ENSTNIT00000020746 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
SSVAAASSASVLVALVEGRGLARGEIGMASLNLRCPELVLSQFADTGTYAKVITKIHILV
PLEILMPDTASEKGKGTNLFNLITENFPGVTFTAVQRKYFNEKKGLEYIQQLCAPEFSTV
LMEVQTKYYCLAAAAALLKYLEFIQNSVYAAKSLRVIFKGSEQTAMIDSASASNLELVVN
NRDRRSEHSLLGVLNHTKTAGGARRLRSNILEPLVDVDTINMRLDSIQELLQEEDLFFGL
KNVIGHFLDTDQLLSVLVQIPKQETVQIAEAKITHVIQLKHTLDLVPQLKMVLKNCSSSL
LKAYSTSLEDSRFDVILEQIKTVINDDTTYLKGSLHMRTQKCYAVRPNINEFLDIARRAY
TELVDDVAGLVNQLGENYGLPMRTSFSTARGFFIQMKLEGVVLPEGKLPSEFIKISKQRN
NYSFTTADLIKMNDRCDEALREIFHMSYVVIRQLLSTIHEHIHCLYKLSDAVSMLDMLVS
LANACTISDYVRPDFTDTLAIKAGRHPILERIAGQLPVSNNSYIYEGCNFVIITGPNMSG
KSTYLKQVALCQIMAQIAQGSYVPAAYASFRIADQIFTRIGVDDDFETNSSTFMLEMKEI
SYILHNISDRSLVIIDELGRGTSAEEGIGLCHSVCEFLLSLKAFTLFATHFLELCHWSLS
IACGDQHMEVQHTRSSDSGADSVVYTYALQRGCSEDRHYGLRAAEMTSLPSDIIQEAKTI
ASKVSQQLLSRHHCDPETLQQRAKYHLANRLLQAARNSRLDPDSLRMYLKGLKKQYEGEL
QAAGQPESSL
Download sequence
Identical sequences H3DJ20
ENSTNIP00000020514

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]