SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for SPU_005440 from Strongylocentrotus purpuratus v3.1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  SPU_005440
Domain Number 1 Region: 3-178
Classification Level Classification E-value
Superfamily Nicotinic receptor ligand binding domain-like 2.62e-38
Family Nicotinic receptor ligand binding domain-like 0.0019
Further Details:      
 
Domain Number 2 Region: 180-320
Classification Level Classification E-value
Superfamily Neurotransmitter-gated ion-channel transmembrane pore 8.37e-26
Family Neurotransmitter-gated ion-channel transmembrane pore 0.00028
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) SPU_005440
Sequence length 384
Sequence
MRMLVDHIADFDEPKQQVTLLCALKVIWRDEYLSWNESDYPEITFLEVDVDLIWSPTITV
LTSNSPDFLQLNHRRVEVSAEGTVTWVSPAIITSTCYFDVLLFPFDVQKCVFEFGPWASP
YNIEELDFFFERNETTVNRYRKNGVWEIVNDTVRKEYTDYSSHEEPFAELHYHITFRRIP
RVYILGIVIPSVLLSISTMLIFLLPPESGEKISFGVTNLLAMVLFQETVRSAMPPTGSPI
LANYICVMMIVACTSLIIEALVLRMYNLGNASDIPRWMQRLFIKKHQTVSLCRRKEPGLH
APLQKGAIIVHHDGSDDPAEHVCEDDQKLQCSDSRNMLDNAELWKMVALSFEEKTAFLTL
CAIAGNIFFTSLYIAILSNIHSRV
Download sequence
Identical sequences W4XPV3
SPU_005440

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]