SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|13541176|ref|NP_110864.1| from Thermoplasma volcanium GSS1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|13541176|ref|NP_110864.1|
Domain Number 1 Region: 40-111
Classification Level Classification E-value
Superfamily dsRNA-binding domain-like 7.33e-21
Family Ribosomal S5 protein, N-terminal domain 0.0021
Further Details:      
 
Domain Number 2 Region: 124-196
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 4.05e-17
Family Translational machinery components 0.0025
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|13541176|ref|NP_110864.1|
Sequence length 221
Comment 30S ribosomal protein S5P [Thermoplasma volcanium GSS1]
Sequence
MSDEWTPRTQLGKLVASGQIKTISEALKTKLPLKEYEIVDYLLPNIKDEVIDIKRAQRMT
DSGRRMTYSITVVVGNEDGYIGLGIGRSKEAAPAIRKALINAKLNIMEIRRGCGSWECGC
GRAHTLPFLVEGKSGSVRITLKPAPRGVGLAVGNVAKIILRMAGIEDAWGFAAGHTKTTV
NYALAVYNALKETAKVRINPGIVLSTPIYSGSVINVSGHTD
Download sequence
Identical sequences Q97BV6
gi|13541176|ref|NP_110864.1| 273116.TVN0345 WP_010916603.1.10044

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]