SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 124485.m00003 from Trichomonas vaginalis

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  124485.m00003
Domain Number 1 Region: 3-105
Classification Level Classification E-value
Superfamily Ribonuclease H-like 0.00000000000119
Family Retroviral integrase, catalytic domain 0.013
Further Details:      
 
Weak hits

Sequence:  124485.m00003
Domain Number - Region: 208-237
Classification Level Classification E-value
Superfamily Tudor/PWWP/MBT 0.0421
Family Tudor domain 0.0087
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) 124485.m00003
Sequence length 250
Sequence
MRNKGTCEVLRVLQKFVAEHSPSTLTSDQDSAYLSNEITDFLIKHNITHYTTEDHNHNIL
GIINRFIRTLRDLNQERDFTEETMKHFLEVYNSSTHSTTGHTPNSMTQQQEEKYIQKKRS
QTQNIRNSTQFTLIPGTKVRVVLDNKPLTKKRLRLSRNYYIVDSTQGNGYLIKAADDSIA
FYPRHKLVESSNGKLAETIDEAKRGVVIEILDYDINDDTYKVRYEGGVEDVIPSKNLRES
KPTHLGPLER
Download sequence
Identical sequences 124485.m00003

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]