SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSTBEP00000013790 from Tupaia belangeri 76

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSTBEP00000013790
Domain Number 1 Region: 76-256
Classification Level Classification E-value
Superfamily Nicotinic receptor ligand binding domain-like 2.22e-39
Family Nicotinic receptor ligand binding domain-like 0.0062
Further Details:      
 
Domain Number 2 Region: 394-436
Classification Level Classification E-value
Superfamily Neurotransmitter-gated ion-channel transmembrane pore 0.00000301
Family Neurotransmitter-gated ion-channel transmembrane pore 0.051
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSTBEP00000013790   Gene: ENSTBEG00000015875   Transcript: ENSTBET00000015881
Sequence length 437
Comment pep:known_by_projection genescaffold:TREESHREW:GeneScaffold_3408:200326:293594:-1 gene:ENSTBEG00000015875 transcript:ENSTBET00000015881 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MKFGIFLLWWGWVLATESRVHWPAREVHEMSKKGRPQRQRREAHEDAHKQGSPILKRSPD
ITKSPLTKSEQLLRIDDHDFSMRPGFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRH
YWKDERLSFPSANNLSMTFDGRLVKKIWVPDMFFVHSKRSFIHDTTTDNVMLRVQPDGTV
LYSLRETVSAMRNMEFSISLDPWTCSLEIESYAYTEDDLMLYWKKGNDSLKTDERISLSQ
FLIQEFHTTTKLAFYSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXSVMAMSLDSHVATVERRMEEKGLQRGHPPGGLPCTGGLPQPAAQLDGSYS
DGEVNDLGNYMPENGEKPDRMMVQLTLASERSSPQRKSQRISYVSMRIDTHAIDKYSRII
FPGAYILFNLIYWSIFS
Download sequence
Identical sequences ENSTBEP00000013790 ENSTBEP00000013790

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]