SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A023JAJ3 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A023JAJ3
Domain Number 1 Region: 84-433
Classification Level Classification E-value
Superfamily gp120 core 5.79e-175
Family gp120 core 0.00000000022
Further Details:      
 
Domain Number 2 Region: 481-605
Classification Level Classification E-value
Superfamily Virus ectodomain 3.03e-58
Family Virus ectodomain 0.0000113
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) A0A023JAJ3
Sequence length 803
Comment (tr|A0A023JAJ3|A0A023JAJ3_9HIV1) Envelope glycoprotein gp160 {ECO:0000256|SAAS:SAAS00936864} OX=11676 OS=Human immunodeficiency virus 1. GN=env OC=Lentivirus; Primate lentivirus group. OH=9606
Sequence
MRVRGTLRNWQQWWIWGSLGFWMLMVCSVMEKLWVTVYYGVPVWKEAKTTLFCASDAKGY
EREVHNVWATHACVPTDPNPQELVLENVTENFNMWKNDMVDQMHEDIISLWDQSLKPCVK
LTPLCVTLNCDKEKQMYALFYKLDIVPLEEYRLINCNTSAISQACPKISFDPIPIHYCAP
AGYAILKCNNKTFNGTGPCQNVSTVQCTHGIKPVVSTQLLLNGSLAEKEIIIRSENLTDN
AKTIIVQLNESVPIVCTRPNNNTRESIRIGPGQTYYAMGDIIGDIRQAHCNLTKGNWSKT
LLRVAEKLKEHFPRTDIEFRPHSGGDLEITMHTFICRGEFFYCNTTQLFNVTYNDTITLP
CRIKQMINMWQEVGRAIYASPIAGNITCNSNITGLLLTRDGGDNNTETFRPEGGDMRNNW
RSELYKYKVVEIKPLGVAPTLAKRRVVEREKRAVGIGAVFLGFLGAAGSTMGAASITLTV
QARQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQTRVLSIERYLKDQQLLGLWGCS
GKLICTTSVPWNVSWSNKSLDDIWNNMTWMQWDREINNYTNIIYTLLEDSQIQQEQNEKD
LLALDSWNNLWNWFGITKWLWYIKIFIMIVGGLIGLRIIFAVLSIVNRVRQGYSPLSLQT
LTQNPRELDRLGRIEEEGGEQDRDRSIRLVNGFLALAWDDLRSLCLFSYHRLRDFILIVA
RAVELLGHSSLRGLQRGWEALKYLGNIIQYWVLELKKSAINLFDNLAIVVAEGTDRIIEF
IQRICRAIRNIPRRIRQGFEAAL
Download sequence
Identical sequences A0A023JAJ3

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]