SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A023NDT8 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A023NDT8
Domain Number 1 Region: 1-145
Classification Level Classification E-value
Superfamily gp120 core 2.22e-75
Family gp120 core 0.00000108
Further Details:      
 
Domain Number 2 Region: 194-318
Classification Level Classification E-value
Superfamily Virus ectodomain 4.45e-58
Family Virus ectodomain 0.0000114
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) A0A023NDT8
Sequence length 517
Comment (tr|A0A023NDT8|A0A023NDT8_9HIV1) Envelope glycoprotein gp160 {ECO:0000256|SAAS:SAAS00936864} OX=11676 OS=Human immunodeficiency virus 1. GN=env OC=Lentivirus; Primate lentivirus group. OH=9606
Sequence
FATGDIIGNIRQAHCNISKSNWTKTLQGVSEKLKVHFPNKTIKFQPSSGGDLEITRHSFN
CRGEFFYCDTSDLIILQCKIKQIINMWQGVGQAIYAPPIAGNITCISNITGLLLTRDGGE
IFRSGGGDMRDNWRSELYKYKVVEINPVGIAPTEAKRRVVEREKRAVGIGAVFLGFLGAA
GSTMGAASITLTVQARQLLTGIVQQQSNLLRAIEAQQHLLQLTVWGIKQLQARVLAMERY
LKDQQLLGIWGCSGKLICTTAAPWNSSWSNKTLDYIWNNMTWMEWEREIDNYTNTIYTLL
EDSQIQQEKNEKDLLALDSWNNLWNWFNITNWLWYIKIFIMIVGGLIGLRMIFAVLSIVN
RVRQGYSPLSFQTLTPNPREPDRLRGIEEEGGEQDRDRSIRLVSGFLALAWDDLRSLCLF
SYHRLRDFILVAARAVELLGRSSLRGLQRGWEALKYLGSLVQYWGRELQQSAISLLDTIA
IQVAEGTDRIIEFIQNIIRFFTNIPRRIRQGFEAALL
Download sequence
Identical sequences A0A023NDT8

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]