SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A023NDU2 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A023NDU2
Domain Number 1 Region: 1-146
Classification Level Classification E-value
Superfamily gp120 core 1.02e-78
Family gp120 core 0.000000826
Further Details:      
 
Domain Number 2 Region: 195-319
Classification Level Classification E-value
Superfamily Virus ectodomain 4.85e-58
Family Virus ectodomain 0.0000126
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) A0A023NDU2
Sequence length 518
Comment (tr|A0A023NDU2|A0A023NDU2_9HIV1) Envelope glycoprotein gp160 {ECO:0000256|SAAS:SAAS00936864} OX=11676 OS=Human immunodeficiency virus 1. GN=env OC=Lentivirus; Primate lentivirus group. OH=9606
Sequence
FFATGDIIGNIRQAHCNISKSNWTKTLQGVSEKLEKYFPNKTIKFQPSSGGDLEITTHSF
NCRGEFFYCNTSGLIILQCKIKQIINMWQGVGQAIYAPPIAGNITCTSNITGLLLTRDGG
EIFRPGGGDMRDNWRSELYKYKVVEINPVGIAPTEAKRRVVEREKRAVGIGAVFLGFLGA
AGSTMGAASITLTVQARQLLSGIVQQQSDLLRAIEAQQHLLQLTAWGIKQLQARVLAMER
YLKDQQLLGIWGCSGKLICTTAVPWNSSWSNKTLDYIWNNMTWMEWEKEIDNYTNTIYSL
LEDSQIQQEKNEKDLLALDSWNNLWNWFNITNWLWYIKIFIMIVGGLIGLRIIFAVLSIV
NRVRQGYSPLSFQTLTPNPREPDRLRGIEEEGGEQDRDRPIRLVSGFLALVWDDLRSLCL
FSYHRLRDFTLIAARAVELLGRSSLRGLQRGWEALKYLGSLVQYWGRELQQSAISLLDTI
AIQVAEGTDRIIEFIQNIIRFFTNIPRRIRQGFEAALL
Download sequence
Identical sequences A0A023NDU2

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]