SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A060GRE9 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A060GRE9
Domain Number 1 Region: 22-381
Classification Level Classification E-value
Superfamily gp120 core 4.51e-165
Family gp120 core 0.000000000471
Further Details:      
 
Domain Number 2 Region: 429-554
Classification Level Classification E-value
Superfamily Virus ectodomain 7.48e-60
Family Virus ectodomain 0.00000668
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) A0A060GRE9
Sequence length 745
Comment (tr|A0A060GRE9|A0A060GRE9_9HIV1) Envelope glycoprotein gp160 {ECO:0000256|SAAS:SAAS00936864} OX=11676 OS=Human immunodeficiency virus 1. GN=env OC=Lentivirus; Primate lentivirus group. OH=9606
Sequence
CTDNIKNNGTNSTLETHMKVGEIKNCSFNITTNMKDKIQKTYALFYELDVEPIENITSKN
GSSNNGTRYDSYRVISCNTSVITQACPKISFEPIPIHYCAPAGFAILKCNNKTFSGKGQC
TNVSTVQCTHGIRPVVSTQLLLNGSLAEDKVVIRSDNFSDNAKIIIVQLNATVQINCTRP
NNNTRTSIHIGPGRAFYATGDIIGNIRQAHCNISMKEWGETLGKVVEKLREQYSTNTSQI
IAFRPSSGGDQEITMHSFNCGGEFFYCNLSKLFNSTWNDTNTEWNTTELANITKYNDSKH
NDTIIIPCRIKQFINMWQAVGKAMYAPPIRGVISCSSNITGLLLTRDGGPNSNNETFRPQ
GGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQKEKRAVGMGALFLGFLGAAGSTMG
AASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQ
LLGIWGCSGKLICTTTVPWNASWSNKSLDDIWNNMTWMQWDREISNYTSLIYTLIEESQI
QQEENEKELLELDKWASLWNWFDISNWLWYIRLFIMIVGGLVGLRIIFAVLSVVNRVRQG
YSPLSFQTHFPAPRGPDRPEGTEEEGGERDRGTSTPLVGGFLTLIWGDLRSLCLFSYHRL
RDLLLIVTRIVELLGRRGWELLKYWWNLLQYWSQELKNSAVSLLNFTAIAVAEGTDRIIE
VLQGIGRAILHIPTRIRQGLERSLL
Download sequence
Identical sequences A0A060GRE9

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]