SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A068EYM5 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A068EYM5
Domain Number 1 Region: 157-494
Classification Level Classification E-value
Superfamily gp120 core 8.34e-177
Family gp120 core 0.000000000152
Further Details:      
 
Domain Number 2 Region: 543-668
Classification Level Classification E-value
Superfamily Virus ectodomain 1.78e-58
Family Virus ectodomain 0.00000755
Further Details:      
 
Domain Number 3 Region: 84-130
Classification Level Classification E-value
Superfamily gp120 core 0.00000000000000224
Family gp120 core 0.00013
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) A0A068EYM5
Sequence length 859
Comment (tr|A0A068EYM5|A0A068EYM5_9HIV1) Envelope glycoprotein gp160 {ECO:0000256|SAAS:SAAS00936864} OX=11676 OS=Human immunodeficiency virus 1. GN= OC=Lentivirus; Primate lentivirus group. OH=9606
Sequence
MKVRGIRKNCQNLWKWGTMLLGMLMICSAAEKLWVTVYYGVPVWREATTTLFCASDAKAY
DTEAHNVWATHACVPTDPNPQEVLLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVK
LTPLCVTLNCTELGNTTRMNSTTSERNRTWEYGTYGEIKNCSFNITTSIRNKVQKEYALM
YKVDLVPINDDNNSHSYRLINCNTSVITQACPKVSFEPIPIHYCTPAGFAILKCNDKKFN
GTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTDNAKTIIVQLNETVEI
NCTRPNNNTRKSIHIGPGRAWYTTGDIIGNIRQAHCNLSITQWNRTLEQIAVKLREQFKN
KTIVFNQSSGGDPEIVTHSFNCGGEFFYCNTTVLFNSTWNDTSSWKFTEGLNDTITLQCR
IKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLLLTRDGGNNMNNGTEIFRPGGGDMRDN
WRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGTIGAMFLGFLGAAGSTMGAASVTL
TVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWG
CSGKLICTTAVPWNASWSNKSLNDIWNNMTWMDWEREIDNYTNTIYSLLEESQNQQEKNE
QELLKLDKWGSLWNWFDISNWLWYIKIFIMIIGGLVGLRIVFTVLSIVNRVRQGYSPLSF
QTRLPTPRGPDRPEGTEEDGGERDRDRSDRLVNGFLALIWGDLRNLCLFSYHRLRDLLLI
VTRIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVVQRIF
RAILHIPTRIRQGLERALL
Download sequence
Identical sequences A0A068EYM5

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]