SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A068F344 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A068F344
Domain Number 1 Region: 151-482
Classification Level Classification E-value
Superfamily gp120 core 1.57e-162
Family gp120 core 0.00000000166
Further Details:      
 
Domain Number 2 Region: 530-655
Classification Level Classification E-value
Superfamily Virus ectodomain 8.9e-58
Family Virus ectodomain 0.00000998
Further Details:      
 
Domain Number 3 Region: 84-138
Classification Level Classification E-value
Superfamily gp120 core 9.81e-16
Family gp120 core 0.00013
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) A0A068F344
Sequence length 853
Comment (tr|A0A068F344|A0A068F344_9HIV1) Envelope glycoprotein gp160 {ECO:0000256|SAAS:SAAS00936864} OX=11676 OS=Human immunodeficiency virus 1. GN= OC=Lentivirus; Primate lentivirus group. OH=9606
Sequence
MRVMGIRRNWQHLWKWGTLILGLVIICSAKDNLWVTVYYGVPVWEDADTPLFCASDVKSY
SSEKHNVWATHACVPTDPNPQEIAMENVTENFNMWKNNMVEQMHEDIISLWDESLKPCVK
LTPLCVTLNCTNVNCTTSCTGSTSSPVNREEIKNCSFNVTTELKDKKKKEYALFYKLDVV
PIDNDNSSYRLINCNVSSIKRACPKVDFEPIPIHYCAPAGFAILKCRDKKFNGTGPCNNV
STVQCTHGIKPVVSTQLLLNDSLAEEEIMIRSENFTDNTKVIIVQLNESETVEITCIRPN
NNTRKSITFGPGQAFYATSNIIGDIRQAYCNVNKTKWNQMLLKVKTHLQEKYPNGTIYFN
SSAGGDLEITTHSFNCRGEFFYCNTSVLFNTSSMNETENETGNITLPCNIKQIVRMWQRV
GQATYAPPIKGKIECSSNITGLILTRDGGGSNSSEETFRPGGGDMRDNWRSELYKYKTVK
IKSLGVAPTRARRRVVEREKRAVGLGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQ
QQSNLLRAIETQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPW
NTSWSNKSYNEIWDNMTWIQWEKEINNYTQQIYNLIEESQNQQEKNEQDLLALDKWASLW
NWFDITNWLWYIKIFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSFQTLTHHQREPDRL
ERTEEGGGEQDRNRSVRLVSGFLALAWDDLRSLCLFSYHRLRDFALIAARTVELLGRSSL
KGLRLGWEGLKYLWNLLLYWGRELKNSAINLLDTVAIAVADWTDRIIEVARRVCRAILNI
PVRIRQGLERALL
Download sequence
Identical sequences A0A068F344

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]