SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A072U4W3 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A072U4W3
Domain Number 1 Region: 57-316
Classification Level Classification E-value
Superfamily WD40 repeat-like 5.5e-33
Family WD40-repeat 0.0095
Further Details:      
 
Weak hits

Sequence:  A0A072U4W3
Domain Number - Region: 8-73
Classification Level Classification E-value
Superfamily beta-sandwich domain of Sec23/24 0.0126
Family beta-sandwich domain of Sec23/24 0.032
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) A0A072U4W3
Sequence length 362
Comment (tr|A0A072U4W3|A0A072U4W3_MEDTR) WD repeat phosphoinositide-interacting-like protein {ECO:0000313|EMBL:KEH24371.1} KW=Complete proteome; Reference proteome OX=3880 OS=Medicago truncatula (Barrel medic) (Medicago tribuloides). GN=MTR_7g108520 OC=Trifolieae; Medicago.
Sequence
MATLPASPSPPWHTNPNPNNNNPNSISIPNPNFHPDQSQTLDFDSLMSPQPQSPSATTTP
PLPPSLLQLSFNQDHACFAAATDNGFRIYNCDPFRELFRREFGGGGIAHVEMLFRCNILA
LVGGGSHPQYPPNKVMIWDDHQGTCIGELSFRAAVRGVRLRRDRIIVVVEQKIFVYNFAD
LKLLHQIETIANPKGLCSVSHVSESLVLACPGLHKGQIRVEHFALKKTKFISAHDSRIAS
FALTLDGQLIATASVKGTLIRIYDTDSGTLLQEVRRGANAAEIYSLAFSSTAQWLAVSSD
KGTVHVFSLKVNSSGVPENETSQGSSSSSDAAIVPSSSSRSFIKFKGKIFCCFFINLKSI
SF
Download sequence
Identical sequences A0A072U4W3
XP_013450343.1.50012 Medtr7g108520.3

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]