SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A075II17 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A075II17
Domain Number 1 Region: 151-491
Classification Level Classification E-value
Superfamily gp120 core 2.45e-170
Family gp120 core 0.000000000257
Further Details:      
 
Domain Number 2 Region: 539-664
Classification Level Classification E-value
Superfamily Virus ectodomain 1.52e-56
Family Virus ectodomain 0.00000881
Further Details:      
 
Domain Number 3 Region: 85-132
Classification Level Classification E-value
Superfamily gp120 core 0.0000000000000177
Family gp120 core 0.00017
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) A0A075II17
Sequence length 855
Comment (tr|A0A075II17|A0A075II17_9HIV1) Glycoprotein 120 {ECO:0000256|HAMAP-Rule:MF_04083} OX=11676 OS=Human immunodeficiency virus 1. GN=env OC=Lentivirus; Primate lentivirus group. OH=9606
Sequence
MRVKGIRKNCQNLWRWGTLLLGILMICSATENLWVTVYYGVPVWKEATTTLFCASDAKAY
KTEVHNVWATHACVPTDPNPQEIELVNVTENFNMWKNHMVEQMHEDIISLWEQSLKPCVK
LTPLCVTLNCTDARNNTKTYNSSWGRIEKGEIKNCTFNVTTSVQGKMHEERALLYKLDVV
PLEGRNNSNSYRLISCNTSVITQACPKVTFEPIPIHYCAPAGFAILKCNETKFTGTGPCK
NVTTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSENITDNVKTIIVQLKEAVKINCTRPN
NNTRRSIPIGQGRAWYATGDIIGDIRQAHCNISKTEWNNTLKQIVTKLREKVGNNKTIAF
NPSSGGDPEIVMHSFNCGGEFFFCNTTKLFNSSWNSSWNYSSTENNTETSNETITLPCRI
KQIINMWQEVGKAMYAPPIKGQIRCSSNITGLLLTRDGGDDNTIETFRPGGGDMRDNWRS
ELYKYKIVKIEPLGVAPTRAKRRVVQREKRAVGIGAVLFGFLGAAGSTMGAASMTLTVQA
RQLMSGIVQQQQNLLRAIEAQQHLLQLTVWGIKQLQARILAIERYLKDQQLLGIWGCSGK
LICTTTVPWNTSWSNKSLQTIWENMTWQQWEKEIDNYTELIYTLIEESQNQQEKDEQELL
ELDKWASLWNWFSITKWLWYIKIFIMVVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRL
PAPRGPDRPEGIEEDGGERDKDRSGQLVDGFLALIWVDLRSLCLFIYHRLRDSLLIAARI
VELLGRRGWEILKYWWNLLQYWSQELKNSASSLFNVTAIAVAEGTDRIIEVVRRSFRAFL
HIPRRIRQGFERALL
Download sequence
Identical sequences A0A075II17

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]