SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A075VRA0 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A075VRA0
Domain Number 1 Region: 68-113,213-318,346-510
Classification Level Classification E-value
Superfamily gp120 core 2.09e-90
Family gp120 core 0.00000487
Further Details:      
 
Domain Number 2 Region: 561-681
Classification Level Classification E-value
Superfamily Virus ectodomain 7.97e-49
Family Virus ectodomain 0.000000617
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) A0A075VRA0
Sequence length 887
Comment (tr|A0A075VRA0|A0A075VRA0_SIV) Transmembrane protein gp41 {ECO:0000256|RuleBase:RU363095} OX=11723 OS=Simian immunodeficiency virus (SIV). GN=env OC=Lentivirus; Primate lentivirus group. OH=9598
Sequence
MGCLGNQLLIAILLLSAYGIYCIQYVTVFYGIPAWRNASVPLFCATKNRDTWGTTQCLPD
NDDYSELALNVTESFDAWDNTVTEQAIEDVWNLFETSIKPCVKLTPLCIAMRCNKTETDK
WGLTRNATATTTTTRPTTTTKPETAKVINESSSCIKHDNCTGLEQEPMVNCKFNMTGLKR
DKTKEYNETWYSRDLVCEQGTSGNESRCYMNHCNTSVIQESCDKHYWDAIRFRYCAPPGY
ALLRCNDSNYSGFEPNCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGKRNSTI
ISLNKFYNLTMRCRRPGNKTILPVGTMSGFRFHLQQIINKKPRQAWCRFEGRWKEAIREV
KETIVKHPRYTGTNDTDKIYLTAPRGGDPEVTFMWTNCRGEFLYCKMNWFLNWVENRNTS
HPRWTEQTPGEKHKRNYVPCHIRQIINTWHKVGINVYLPPREGDLTCNSTVTSLLANMDW
IGNDETNITMGADVAELYRLELGDYKLVEITPIGLAPTSVRRYTTTGASRNKRGVFVLGF
LGFLATAGSAMGAASLTLSAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTR
VTAIEKYLKDQAQLNSWGCAFRQVCHTTVPWPNATLLPNWNNMTWQEWEKQVNFLEANIT
QLLEDAQIQQEKNMYELQKLNSWDVFGNWFDLTSWVKYIQYGVLIVLGVIGLRIVIYVVQ
MLARLRQGYRPVFSSPPAYVQQIPIHKGQEQPTEDGEEGDSGDRGGSRSWPWQIEYIHFL
IRQLIRLLTWLFSNCRTYLLRIYQILQPVFQRLFSTAQRVQEVIRTEIAYLQYGCRWFQE
AVQAVWRAARETLESAWRDLWETLGRVGRGILAIPRRIRQGLELILL
Download sequence
Identical sequences A0A075VRA0

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]