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Domain assignment for A0A075VSM4 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  A0A075VSM4
Domain Number 1 Region: 68-113,213-318,346-510
Classification Level Classification E-value
Superfamily gp120 core 4.55e-96
Family gp120 core 0.00000459
Further Details:      
 
Domain Number 2 Region: 561-681
Classification Level Classification E-value
Superfamily Virus ectodomain 1.04e-49
Family Virus ectodomain 0.00000065
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) A0A075VSM4
Sequence length 887
Comment (tr|A0A075VSM4|A0A075VSM4_SIV) Transmembrane protein gp41 {ECO:0000256|RuleBase:RU363095} OX=11723 OS=Simian immunodeficiency virus (SIV). GN=env OC=Lentivirus; Primate lentivirus group. OH=9598
Sequence
MGCLGNQLLIAILLLSAYGIYCTQYVTVFYGVPAWRNATVPLFCATRNRDTWGTTQCLPD
NDDYSELALNVTESFDAWNNTVTEQAIEDVWNLFETSIKPCVKLTPLCITMRCNKTETDK
WGLTRTATATTATTTSTTTTPNVTAKVINEGDPCIQNNSCAGLEQEPMVNCKFNMTGLKQ
DKKKEYNETWYSRDLVCEQSTNESESKCYMNHCNTSVIQESCDKHYWDAIRFRYCAPPGY
ALLRCNDSNYSGFAPNCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRRNSTI
ISLNKYYNLTMRCRRPGNKTVLPITIKSGWVYHSQLILNERPRQAWCRFEGSWKEAIQEV
KETIVKHPRYTGTNDTKKINLTAPGGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRNTS
HPRWKEQNYKERKKRNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLLATMDW
IDNNETNITMGADVAELYRLELGDYKLVEITPIGLAPTTVRRYTTTGASRNKRGVFVLGF
LGFLATAGSAMGAASLTLSAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTR
VTAIEKYLKDQAQLNSWGCAFRQVCHTTVPWPNDTLLPNWNNMTWQEWEKQVNFLETNIT
YLLEEAQIQQEKNMYELQKLNSWDVFGNWFDLTSWIKYIQYGVFIVLAVIGLRIVIYVVQ
MLARLRQGYRPVFSSPPAYVQQIHISKEQEQPIKEGEEGDGGDRGGNRSWPWQIEYIHFL
IRQLIRLLTWLFSNCRTYLLRIYQILQSVFQRLFSVIQRIQEVIRTEISYLQYGCRWFQE
AAQAAWRAARETLESAWRDLWETLGRVGRGILAIPRRIRQGLELTLL
Download sequence
Identical sequences A0A075VSM4

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