SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A076V479 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A076V479
Domain Number 1 Region: 154-488
Classification Level Classification E-value
Superfamily gp120 core 4.02e-170
Family gp120 core 0.000000000294
Further Details:      
 
Domain Number 2 Region: 536-661
Classification Level Classification E-value
Superfamily Virus ectodomain 7.69e-58
Family Virus ectodomain 0.00000601
Further Details:      
 
Domain Number 3 Region: 84-134
Classification Level Classification E-value
Superfamily gp120 core 0.0000000000000022
Family gp120 core 0.00014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) A0A076V479
Sequence length 852
Comment (tr|A0A076V479|A0A076V479_9HIV1) Glycoprotein 120 {ECO:0000256|HAMAP-Rule:MF_04083} KW=Complete proteome OX=11676 OS=Human immunodeficiency virus 1. GN=env OC=Lentivirus; Primate lentivirus group. OH=9606
Sequence
MRAKGIRRNYQHLWRWGTMLLGMLMICNATEQLWVTVYYGVPVWREATTTLFCASDAKGY
DTEAHNIWATHACVPTDPNPQEINLDNVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVK
LTPLCVTLNCTDWNANDTAANATVTNSSLSMKGEMKNCSFNITESIGNKRRKEYALFNKL
DVISIDNNDNTSYMIINCNTSVIRQACPKVTFEPIPIHYCAPAGFAILKCNDKDFNGTGP
CKNVSTVQCTHGIRPVVSTQLLLNGSLAEEVVIRSENFTNNAKTIIVQLNKTVVINCTRP
NNNTRKSINIGPGRAFYATGDITGDIRRAHCTLSREDWNNTLRQIAKVLREQFGENKKIA
FNQSSGGDPEIILHTFNCGGEFFYCNTSGLFNSTWYGNETAEANSTNTNITLPCRIKQII
NRWQEVGKAMYAPPIRGQIRCSSNITGILLTRDGGDNNTEIETFRPGGGDMRDNWRSELY
KYKVVEIEPLGIAPTKAKRRVVQREKRAITLGAMFLGFLGAAGSTMGAASVTLTVQARQL
LSGIVQQQNNLLKAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQRLLGIWGCSGKLIC
PTAVPWNASWSNKSMDDIWNNMTWMEWDREINNYTRLIYSLLEESQNQQDKNEKELLELD
KWASLWNWFDISNWLWYIKIFIMIVGGLVGLRIVFTILSIVNRVRQGYSPLSFQTRPPAP
RGPDRPEGIEEEGGERDRDGSSRLVHGFLALIWDDLRSLCLFSYHRLRDLLLILARTVEL
LGRRGWEALKYLWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRIIEVGQAIGRAIIHIP
RRIRQGLERTLL
Download sequence
Identical sequences A0A076V479

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]