SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A077H268 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A077H268
Domain Number 1 Region: 157-499
Classification Level Classification E-value
Superfamily gp120 core 3.34e-170
Family gp120 core 0.000000000279
Further Details:      
 
Domain Number 2 Region: 547-671
Classification Level Classification E-value
Superfamily Virus ectodomain 5.26e-58
Family Virus ectodomain 0.00000744
Further Details:      
 
Domain Number 3 Region: 84-139
Classification Level Classification E-value
Superfamily gp120 core 0.00000000000000471
Family gp120 core 0.00014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) A0A077H268
Sequence length 863
Comment (tr|A0A077H268|A0A077H268_9HIV1) Glycoprotein 120 {ECO:0000256|HAMAP-Rule:MF_04083} OX=11676 OS=Human immunodeficiency virus 1. GN=env OC=Lentivirus; Primate lentivirus group. OH=9606
Sequence
MTVMGIKKNYQHLWRGGILLLGILMICSTTENLWVTVYYGVPVWKEATTTLFCASDAKAY
TTEAHNVWATHACVPTDPNPQEIVLKNVTEEFNMWKNDMVEQMHEDVISLWDQSLKPCVK
LTPLCVTLNCTNLNKTTNATDSNDNSTSSWMSEGKGEMKNCSFNVTTNIRDKMKKEYALF
YTLDITPIDNDNNSYTLTSCNTSVLTQACPKISFEPIPIHYCAPAGFAILQCNEKNFTGK
GPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEKEVIIRSDNITDNTKTIIIQLTEPVQINC
TRPNNNTRRGIHLGPGGAIYATGDIIGNIRQAHCNISREQWNNTLGKIVEKLREQFNNKT
IVFNQSSGGDPEIVMHSVNCGGEFFYCNTTKLFNSTWTWNSTINSTENSRNDTNITLPCR
IKQIINMWQKVGRAMYAPPIAGIIKCSSNITGLLLTRDGGKKTKDNGTESDTEIFRPGGG
DMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAA
ALTLTVQARQLLSGIVRQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLL
GIWGCSGKLICPTAVPWNASWSNRSLDEIWQNMTWMEWEKEIDNYTSIIYTLIEESQNQQ
EKNEQELLQLDNWASLWNWFSITNWLWYIKLFIMIVGGLIGLRIVFVVLSIVNRVRQGYS
PLSFQTHFPGPRGPDRPGGIEEEGGETGRDTSRPLVNGFLEIIWIDLRSLCLFSYRLLRD
LLLIVTRTVELLGRRGWEALKLWWNLLQYWSQELKNSAVSLLNAIAVAVAEGTDRIIEVL
QRIFRAILHIPTRIRQGLERALL
Download sequence
Identical sequences A0A077H268

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]