SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A0A0QVA0 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A0A0QVA0
Domain Number 1 Region: 130-288
Classification Level Classification E-value
Superfamily Retrovirus capsid protein, N-terminal core domain 2.12e-81
Family Retrovirus capsid protein, N-terminal core domain 0.0000000666
Further Details:      
 
Domain Number 2 Region: 1-135
Classification Level Classification E-value
Superfamily Retroviral matrix proteins 6.28e-64
Family Immunodeficiency virus matrix proteins 0.00000142
Further Details:      
 
Domain Number 3 Region: 279-337
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 1.41e-24
Family Retrovirus capsid protein C-terminal domain 0.0000415
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) A0A0A0QVA0
Sequence length 338
Comment (tr|A0A0A0QVA0|A0A0A0QVA0_9HIV1) Gag protein {ECO:0000313|EMBL:AIT40150.1} OX=11676 OS=Human immunodeficiency virus 1. GN=gag OC=Lentivirus; Primate lentivirus group. OH=9606
Sequence
GARASVLSGGKLDAWEKIRLRPGGKKKYKMKHIVWASRELERFAINPGLLETAEGCQQII
EQLQSTLKTGSEELKSLYNTIAVLWCVHQKVEVKDTKEALDKIEEAQKKSQQKTQQAAAG
TGSNSKVSQNYPIVQNAQGQMVHQSLSPRTLNAWVKVVEEKGFNPEVIPMFSALSEGATP
QDLNMMLNIVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIPPGQMREPRGSDIAGTTS
TLQEQIGWMTSNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFY
KTLRAEQATQEVKNWMTETLLVQNANPDCKSILKALGT
Download sequence
Identical sequences A0A0A0QVA0

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]