SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A0B0SB55 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A0B0SB55
Domain Number 1 Region: 733-885,1293-1477,1519-1550
Classification Level Classification E-value
Superfamily PFL-like glycyl radical enzymes 1.67e-88
Family R1 subunit of ribonucleotide reductase, C-terminal domain 0.011
Further Details:      
 
Domain Number 2 Region: 297-443,670-735
Classification Level Classification E-value
Superfamily Hedgehog/intein (Hint) domain 1.81e-34
Family Intein (protein splicing domain) 0.0067
Further Details:      
 
Domain Number 3 Region: 884-998,1037-1053,1219-1291
Classification Level Classification E-value
Superfamily Hedgehog/intein (Hint) domain 4.32e-33
Family Intein (protein splicing domain) 0.011
Further Details:      
 
Domain Number 4 Region: 1561-1655,1686-1702,1896-1960
Classification Level Classification E-value
Superfamily Hedgehog/intein (Hint) domain 7.29e-29
Family Intein (protein splicing domain) 0.011
Further Details:      
 
Domain Number 5 Region: 5-151
Classification Level Classification E-value
Superfamily PFL-like glycyl radical enzymes 0.00000000000000146
Family R1 subunit of ribonucleotide reductase, C-terminal domain 0.045
Further Details:      
 
Domain Number 6 Region: 515-617
Classification Level Classification E-value
Superfamily Homing endonucleases 0.000000000000248
Family Intein endonuclease 0.019
Further Details:      
 
Domain Number 7 Region: 1120-1194
Classification Level Classification E-value
Superfamily Homing endonucleases 0.00000000000051
Family Intein endonuclease 0.04
Further Details:      
 
Domain Number 8 Region: 1960-2037
Classification Level Classification E-value
Superfamily PFL-like glycyl radical enzymes 0.0000000000488
Family R1 subunit of ribonucleotide reductase, C-terminal domain 0.015
Further Details:      
 
Domain Number 9 Region: 203-266
Classification Level Classification E-value
Superfamily PFL-like glycyl radical enzymes 0.0000000211
Family B12-dependent (class II) ribonucleotide reductase 0.056
Further Details:      
 
Domain Number 10 Region: 1770-1835
Classification Level Classification E-value
Superfamily Homing endonucleases 0.000000737
Family Intein endonuclease 0.052
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) A0A0B0SB55
Sequence length 2200
Comment (tr|A0A0B0SB55|A0A0B0SB55_9DEIN) Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410} KW=Complete proteome OX=1577051 OS=Thermus sp. 2.9. GN=QT17_01330 OC=Thermus.
Sequence
MERYFFDEHAQAIAKRQYLQPGDGDILGMFRRVAREIAKPEKPEERAYWEEKFFELMSSK
RFSPGGRILAGAGTAHGNLLNCFVQGATENPPESFAGIMEVAKKLALVTKVGGGNGVNLD
PYRSRGTRKRRAVQGVAYLSAGHPDVEDFIRGLMRPPINPDGPKEEIALKNFARVVYGEV
SPELKALAERYGVALAQEPPGDVIRVPDDMGGIVEAAKEAADLARRGLVPHVDFSLLRPE
GAPIRGSGGTSSGPVSFLFEIFDNFLEWAALGAEEAGPVATLRYVYAPVLRVVRQGGCLH
PDTLVHTDRGTLRLCELVDPFRRGWQRHTLSVATDEGWRPSPEGYNNGVAPTLRVVLENG
LEVQGTPNHKLKVLREDGTRAWVELQELKPGDWVIWVLDEHTGTPVQLAPLDEPFHPNAT
PIRTPEVLTEDLAFLLGFFFGEGFVSGDRLGFSVHEDEPMREEVKRLFRELFGLELREEK
KPGDRSVTLVVRSRPLVTWLKKNGLLKGKARELEVPRAIRQSPRPVLAAFLRGLFEADGT
VTAGYPMLATASKRLAQDVMVLLGGLGIPSKLLRYNPRPGRFSKAEHYRVRVVTAKGLER
YLERIGVPQGSRLEALYQSRPDTRRESSWPLPHAEGLLRPLLAVAEKGGKGHVSPYTPLR
KDLLRYLRGERQLTATGYTLVQEKAQGLGLEAEPFAFNEYYVRVAAVEPGGEILTLDLSV
EGNHTYLANGLVSHNTRRGAGMATLSIEHPDLLDFLTAKDLDREKAEGDISTFNISVLVS
DAFMRALEQDALWPVTPIEVPGKYYPYPLEGPYTGKVPELPEREDGAKAIPLYEGKVPAR
WLWHEIAWHAWATGEPGLIFVDRVNALSALKGLGERYQIRSTNPCFVGSTRVPTEYGLVP
IAELAEKPEGFFLVTDNRAPFGGVGRPMPHEGTTVRRAAKAFFTGVKPVVRLRTREGLEL
TLTPDHPVLTPLGYREVGSLRPGDRILIQSGEGLFPKEVALPAPALAVVRERVATAGSRG
GAGRADVRAQYANLPTQWSRELGVALGWLVGDGYLREDGVGFYFSREDFQALGWLVDLLR
DWLGGGTLQETSSNTYHLHFKRIPAEFFQALGVKVAKATEKRVPESLFRAPREAVVGFLQ
GLFSADGSVQLNPGKKDATVRLASSSLALLQDVQLLLLNLGIFGKIYRRRAAGKTSLPDG
RGGLKEYPVAEQYELILGARSRDRFAEVVGFLQEEKQARLCAYLQDRPRGSYRKPFVAVV
ERLEALGEAPVYDLTEPVTHSLIANGLVCHNCGEIPLTVGEPCDLGALNLAAYVKDGEFQ
MEAFREDVRTAIRFLDNVLDVNRFALKDNEEAAKRLRRLGLGVMGLADMLIRLDLPYNSE
AARQKVYEILSAMREEAIRASEDLAEERGPFPLYEEHREYFEALGIKPRRNVAVLTVAPT
GTTSMLMGVSSGIEPVFSPFVWRRIGGEYKPLLHPLFVELMEAFPPAPGYEKDGKWDWDK
IVEEIQKDGHGSVQNLPFVPETIRKVFLCAHDIHPLDHVRMQGVVQRAFDAEGYAGNSLS
KCLAKGTLIPTSRGLIPVEEIAPPHPEDTFVPVEGLYTAEGYRITAHYFAGKKRGVRVRL
DNGAELVGAWESHRVLTPEGWRLMRDLKPGDLVLGKLVPSHGPGGAPIPLDFPRRTNAKA
LPLPECMSPELALFLGMLAADGATVERTGFVGIATKSPEVEAAFRNVAYKLFGAEPKATL
DKRTGVRNVYLLSRRLARYVEALIGKGAKEKRVPSQILQGSPEEKLAFLRGLTLDGYARQ
DQGLILYEGKSRRLAYEAAEVARSFGLPWVYQGRKKVRAPRETYFVHSVVVSGPLQELVE
PIESHKRIPRVDKRYRVFVPEEILAATRVGVHHPGYNNLKSVRDRGVSHVYNRTADRLGW
PTEVLAFRVVAVEDAGEVEMYDIEVEDVHRYVVNGIISHNTINLPHEATVADVEAAYTEA
YRTGCKGITVYRDGSREFQVLTVKKEDKEVKEERREAPDEAPQGQEAKRGEGGPVYERPG
RLMGFTDMVKLLSPEGTKRSFLVTVNLLGDRPIEVILTSGKAGDEANADSEALGRVVSIA
LQYGVPPEAIVRTLRGINGGLYGTYQGRLVSSKADLIAVALETIPQAFKGMVGAEEPLPS
LSGGGLALPGALPCPVCGEKALVREEGCYKCQACGYSKCG
Download sequence
Identical sequences A0A0B0SB55
WP_039455449.1.65260

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]