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Domain assignment for A0A0B4VMD2 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  A0A0B4VMD2
Domain Number 1 Region: 128-286
Classification Level Classification E-value
Superfamily Retrovirus capsid protein, N-terminal core domain 7.46e-80
Family Retrovirus capsid protein, N-terminal core domain 0.0000000643
Further Details:      
 
Domain Number 2 Region: 2-133
Classification Level Classification E-value
Superfamily Retroviral matrix proteins 3.26e-62
Family Immunodeficiency virus matrix proteins 0.00000215
Further Details:      
 
Domain Number 3 Region: 277-359
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 7.33e-33
Family Retrovirus capsid protein C-terminal domain 0.000016
Further Details:      
 
Domain Number 4 Region: 374-425
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 6.4e-18
Family Retrovirus zinc finger-like domains 0.0000511
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) A0A0B4VMD2
Sequence length 496
Comment (tr|A0A0B4VMD2|A0A0B4VMD2_9HIV1) Gag polyprotein {ECO:0000256|RuleBase:RU004487, ECO:0000256|SAAS:SAAS00998370} OX=11676 OS=Human immunodeficiency virus 1. GN=gag OC=Lentivirus; Primate lentivirus group. OH=9606
Sequence
MGARASILRGEKLDKWERIRLRPGGKKHYMMKHLVWASRELEKFSLNPGLLETSEGCKQI
MKQLQPALPTGTEELKSLFNTVATLYCVHEGVDVRDTKEALDRIEEEQNKVQQKTQQAKE
ADGKVSQNYPIVQNLQGQMVHQPISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQD
LNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPNPVGQMREPRGSDIAGTTSTL
QEQIAWMTGNPPVPVGDIYKRWIIMGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFFKT
LRAEQATQDVKNWMTDTLLVQNANPDCKTILRALGPGASIEEMMTACQGVGGPSHKARVL
AEAMSQTNSAIMMQRSNFKGPKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKD
CTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTXPSQKQGTVDKEELY
PLTSLKSLFGNDPSSQ
Download sequence
Identical sequences A0A0B4VMD2

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